Redoing research of 'Experimental evidence that evolutionary diverse assemblages result in higher productivity' by Marc W. Cadotte, 2013
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.gitignore
Align.sh
CreatePhylogeny.sh
Download.sh
LICENSE
README.md
Sequences.txt
jModelTestOutput.txt
ncbi_search.pl

README.md

Cadotte2013

Redoing research of 'Experimental evidence that evolutionary diverse assemblages result in higher productivity' by Marc W. Cadotte, 2013

@article{cadotte2013experimental,
  title={Experimental evidence that evolutionarily diverse assemblages result in higher productivity},
  author={Cadotte, Marc W},
  journal={Proceedings of the National Academy of Sciences},
  volume={110},
  number={22},
  pages={8996--9000},
  year={2013},
  publisher={National Acad Sciences}
}

Steps

  • Downloading the sequences: in the terminal, do ./Download.sh
  • Align the sequences: in the terminal, do ./Align.sh
  • Create the phylogeny: in the terminal, do ./CreatePhylogeny.sh

Other files

The file ncbi_search.pl is not mine. It is written by Paul Stothard and can be downloaded from here or somewhere here.