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teaching

Overview of my English teaching activities.

For an overview of my past Dutch teaching activities, go to my lesgeven repository.

Courses I teach

Lesson plans I wrote

Most I plan on paper, but hey, sometimes I do use a computer :-) Most recent at the top.

When What URL
2024-05-24 [1] Bianca workshop, Intermediate here
2024-04-19 [1] Bianca workshop, Basic here
2024-03-14 [3] R, Python and Julia in HPC, R day here
2024-03-12 [3] R, Python and Julia in HPC, Python day here
2024-01-22 [1] AWK course day 1 here
2024-01-18 [1] Intro to Python here
2023-12-14 [1] Bianca workshop, Intermediate here
2023-12-11 [1] Bianca workshop, Basic here
2023-12-01 [4] Programming Formalisms, day 5 here
2023-11-30 [4] Programming Formalisms, day 4 here
2023-11-29 [4] Programming Formalisms, day 3 here
2023-11-13 [2] Introduction to Python for Bioinformaticians, day 5 here
2023-11-10 [2] Introduction to Python for Bioinformaticians, day 3 here
2023-09-11 [1] Bianca workshop, Intermediate here
2023-06-02 [4] Programming Formalisms, day 5 here
2023-06-01 [4] Programming Formalisms, day 4 morning here
2023-06-01 [4] Programming Formalisms, day 4 afternoon here
2023-05-31 [4] Programming Formalisms, day 3 here
2023-05-30 [4] Programming Formalisms, day 2 here
  • [1] UPPMAX
  • [2] NBIS
  • [3] HPC2N and UPPMAX
  • [4] NBIS and UPPMAX

Reflections I wrote

Most I write on paper, but hey, sometimes I do use a computer :-) . Most recent at the top.

When What URL
2024-05-24 [1] Bianca workshop, Intermediate here
2024-04-19 [1] Bianca workshop, Basic here
2024-03-14 [3] R, Python and Julia in HPC, R day here
2024-03-12 [3] R, Python and Julia in HPC, Python day here
2024-01-22 [1] AWK course day 1 here
2024-01-18 [1] Intro to Python here
2023-12-14 [1] Bianca workshop: intro here
2023-12-11 [1] Bianca workshop here
2023-12-01 [1] Programming Formalisms, day 5 here
2023-12-01 [1] Programming Formalisms, course here
2023-11-30 [1] Programming Formalisms, day 4 here
2023-11-29 [1] Programming Formalisms, day 3 here
2023-10-17 [3] Introduction to running R, Python, and Julia in HPC, Python here
2023-10-13 [2] Introduction to Python for Bioinformaticians, day 5 here
2023-10-10 [2] NBIS Introduction to Python for Bioinformaticians, day 3 here
2023-09-11 [1] Bianca workshop: intermediate here
2023-08-27 [5] Lördagskurser here
2023-06-02 [1] Programming Formalisms here
  • [1] UPPMAX
  • [2] NBIS
  • [3] HPC2N and UPPMAX
  • [4] NBIS and UPPMAX
  • [5] Uppsala Makerspace

Evaluations of the courses I coordinate

These are courses I coordinate and teach. Most recent at the top.

When What URL
2023-05-27 Lördagskurser here
2022-12-10 Lördagskurser here
2022-08-02 tresinformal here
2022-05-28 Lördagskurser here
2021-12-15 tresinformal here
2021-12-11 Lördagskurser here
2021-06-22 tresinformal here

Evaluations the courses I taught

These are courses I am not a coordinator of. Most recent at the top.

When What URL
2024-05-24 [1] Bianca workshop, Intermediate here
2024-04-19 [1] Bianca workshop, Basic here
2024-03-14 [3] R, Python and Julia in HPC, R day here
2024-03-12 [3] R, Python and Julia in HPC, Python day here
2024-01-22 [1] AWK course day 1 here
2024-01-18 [1] Intro to Python here
2023-12-01 [1] Programming Formalisms, day 5 here
2023-12-01 [1] Programming Formalisms, course here
2023-11-30 [1] Programming Formalisms, day 4 here
2023-11-29 [1] Programming Formalisms, day 3 here
2023-11-28 [1] Programming Formalisms, day 2 here
2023-10-17 [3] Introduction to running R, Python, and Julia in HPC, Python here
2023-10-13 [2] NBIS Introduction to Python for Bioinformaticians here
2023-09-11 [1] Bianca workshop here
2023-06-02 [1] Programming Formalisms, day 5 here
2023-06-01 [1] Programming Formalisms, day 4 here
2023-05-31 [1] Programming Formalisms, day 3 here
  • [1] UPPMAX
  • [2] NBIS
  • [3] HPC2N and UPPMAX
  • [4] NBIS and UPPMAX
  • [5] Uppsala Makerspace

Evaluations that I did in courses I did not teach

This is for comparison. Most recent at the top.

When What URL
2023-10-19 Introduction to running R, Python, and Julia in HPC, R here
2023-10-18 Introduction to running R, Python, and Julia in HPC, Julia here

Conferences I visited

When Title
2023-10-19 Konferensen i universitetspedagogisk utveckling

Colleague peer observations

Most I plan on paper, but hey, sometimes I do use a computer :-)

When Observee Observer Material What
2023-08-24 Eli Me Paper Architecture technical drawing rules

Teaching material

Articles, blog posts, books

Simulations, tools, programs

  • Hometrainer: self-testing suite
  • LearyCircumplex: tool to draw a Leary circumplex
  • SimImmuneResponse: human immune response simulation, in which the user must do all steps of the immune response
  • SimStagecraft: stagecraft simulation in which the user must connect and use the equipment used in a theatre
  • SoaSim: visual simulation of the transmission of Sexually Transmitted Diseases.

Courses I taught

  • Biology, secondary school program
  • C++ for Biologists: a C++ course aimed at biology students in their MSc studies, teaching material is lost
  • Correct C++: an online C++ course, obsoleted
  • Dojo
  • Makercourse
  • NBIS Python workshop
  • Physics, secondary school program
  • Stagecraft, secondary school program

Files used by continuous integration scripts

Filename Descriptions
mlc_config.json Configuration of the link checker, use markdown-link-check --config mlc_config.json --quiet docs/**/*.md to do link checking locally
.spellcheck.yml Configuration of the spell checker, use pyspelling -c .spellcheck.yml to do spellcheck locally
.wordlist.txt Whitelisted words for the spell checker, use pyspelling -c .spellcheck.yml to do spellcheck locally
.markdownlint.jsonc Configuration of the markdown linter, use markdownlint "**/*.md" to do markdown linting locally. The name of this file is a default name.
.markdownlintignore Files ignored by the markdown linter, use markdownlint "**/*.md" to do markdown linting locally. The name of this file is a default name.

Misc

My favorite literature

  • [Bell, 2020] Bell, Mike. The fundamentals of teaching: A five-step model to put the research evidence into practice. Routledge, 2020.
  • [Hattie, 2012] Hattie, John. Visible learning for teachers: Maximizing impact on learning. Routledge, 2012.

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