OakVar: Genomic Variant Analysis Platform

Mission

• OakVar is a bridge between cutting-edge genomics research and everyday people.
• OakVar democratizes access to genomics knowledge for all.

What it does

• Annotate genomic variants with diverse annotation sources.
• Make databases of annotated variants.
• Query annotated variants with filter sets.
• Make reports in diverse formats.
• Visualize annotated variants with graphical user interface.
• Works via CLI and GUI.
• Easily develop, run, and distribute CLI and GUI genomics apps. OakVar acts as an operating system for genomics apps.
• Connect genomic data to AI/ML models.

Internship (currently full)

The main project will be OakVar. Full remote work. Unpaid position (no funding yet). Please send your application to rkim@oakbioinformatics.com.

Resources

Ready to start? OakVar Documentation

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Medium: https://medium.com/oakvar

Discord: https://discord.gg/wZfkTMKTjG

Reddit: https://www.reddit.com/r/oakvar

Email: rkim@oakbioinformatics.com

Many Thanks to Our Sponsors

Organizational Sponsors

Individual Sponsors

OakVar is in CodeX

License

OakVar is licensed under dual licensing: 1) APGL v3 or higher and 2) paid subscription for commercial or closed-source use. For full license information, see LICENSE.