Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
src
 
 
 
 
 
 
 
 

README.md

EMpire

Simply download and run EMpire.jar for a list of available sub-commands.

Usage: java -Xmx2G -jar EMpire.jar <Command>

Available <Command> options:

IsoformEM_Footprints  | Infer most likely transcripts from ribosome footprint alignments
IsoformEM_Proteomics  | Infer most likely isoforms from MS/MS spectra mapping
FootprintFrameAnaysis | Analyse ribosome footprint alignments in terms of fidelity to annotated coding frames
PeptideDigest         | Enzymatically digest a protein reference

Depedencies

Relies heavily on general purpose java code in https://github.com/rkitchen/Thunder

Also requires several java libraries:

  • commons-io-2.4
  • commons-cli-1.2
  • commons-lang3-3.3.2
  • commons-math3-3.5
  • sqlite-jdbc-3.7.2
  • sam-1.96

About

Isoform-level quantification of ribosome-footprint and proteomic data

Resources

Releases

No releases published

Packages

No packages published

Languages

You can’t perform that action at this time.