hosting code and files related to our paper on alignment of affymetrix mismatch probes
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figure
figures
hgs_uniquelyMapped_probes
jc_presentation
seqData
.Rprofile
README.md
alignmentCounts.txt
changeMDRender.r
checkOld_newSeqs.r
counts_Plots_etc_allOrgs.RData
determineDatasets.Rmd
examineAlignments.Rmd
flightetal_draft.Rmd
flightetal_draft.html
flightetal_draft.md
flightetal_draft.pdf
flightetal_draft_noImages.html
genPlatformSequence.Rmd
generatePDF.r
gsmFiles.txt
mmAlignment.Rmd
paperTests.Rmd
paperTests.html
paperTests.md

README.md

mmAffy

This is the github repo of data files and analysis scripts for a paper "Affymetrix(r) Mismatch (MM) Probes: Useful After All", by RM Flight, A Eteleeb, and EC Rouchka.

It is hoped that the files and code here will allow others to easily reproduce / confirm the work if desired.