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add to instructions

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1 parent 1de7635 commit 928a843842aa8b43177c0b1733e83486db167449 @rmtheis committed May 3, 2012
Showing with 11 additions and 6 deletions.
  1. +11 −6 README.md
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@@ -5,10 +5,10 @@
This project is under construction--please do not try to use it until it is finished!
-##PREREQUISITES##
+##EXTERNAL DEPENDENCIES##
-Bowtie 2
-Velvet
+[Bowtie 2](http://bowtie-bio.sourceforge.net/bowtie2/)
+[Velvet](http://http://www.ebi.ac.uk/~zerbino/velvet/)
##INSTALLATION##
**_Linux (64-bit)_**
@@ -24,18 +24,23 @@ Download [here](http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.0.0-b
cd velvet
make
-#### 3. Install this project
+#### 3. Install required Perl modules
- git clone git://github.com/rmtheis/intron-polymorphism intron-poly
cpan File::Basename
cpan IO::File
cpan IPC::System::Simple
cpan Sys::CPU
+#### 4. Install this project
+
+ git clone git://github.com/rmtheis/intron-polymorphism.git intron-poly
##RUNNING##
- ip_handler.pl
+ cd intron-poly
+ ./ip_handler.pl
+
+##EXAMPLE TEST SETS##
##MANUAL##

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