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Pipeline to identify intron insertions/deletions
Perl
tree: 1b84b740fc

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testdata
.gitignore
COPYING
IntronPoly.pm
README.md
ip_handler.pl
validate_fasta.pl
validate_fastq.pl

README.md

intron-polymorphism


INTRODUCTION

This project is under construction--please do not try to use it until it is finished!

EXTERNAL DEPENDENCIES

INSTALLATION

Linux (64-bit)

1. Install Bowtie 2

Download here

2. Install Velvet

git clone git://github.com/dzerbino/velvet.git velvet
git checkout aeb11f8058e4ea794a6ec425c168ffcbbfd1bbbc
cd velvet
make

3. Install required Perl modules

cpan IPC::System::Simple
cpan Sys::CPU

4. Install this project

git clone git://github.com/rmtheis/intron-polymorphism.git intron-poly

RUNNING

cd intron-poly
./ip_handler.pl

EXAMPLE TEST SETS

MANUAL

LICENSE

Apache 2.0

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