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R Package to determine Thermal Vegetation Periods
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README.md

vegperiod: Determine Thermal Vegetation Periods

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The vegetation period, or growing season, is the period of the year when the weather conditions are sufficient for plants to grow. This package collects methods to calculate climatological or thermal growing seasons solely based on daily mean temperatures and the day of the year (DOY). Because of their simplicity, they are commonly used in plant growth models and climate change impact assessments.

The concept of a temperature driven vegetation period holds mostly for the temperate climate zone. At lower latitudes, other factors such as precipitation and evaporation can be more decisive. Some methods such as GSL of ETCCDI are employed globally (with a half year shift in the southern hemisphere). Others have a smaller area of application as they have been parameterized with local to regional observations. Menzel and vonWilpert are used throughout Germany.

The package also includes functions for downloading open meteo data from Germany's National Meteorological Service (Deutscher Wetterdienst, DWD).

Installation

The stable version can be installed from CRAN

install.packages("vegperiod")

and the development version is available from Github using the package remotes (formerly devtools)

if(!require("remotes")) install.packages("remotes")
remotes::install_github("rnuske/vegperiod")

Usage

Vegetation periods a calculated using the function vegperiod(). One has to choose at least a start and end method. Some methods, such as 'Menzel', require additional arguments.

data(goe)
vegperiod(dates=goe$date, Tavg=goe$t, 
          start.method="Menzel", end.method="vonWilpert", 
          species="Picea abies (frueh)", est.prev=5)

Implemented start and end methods

Some common methods for calculating the onset and end of vegetation periods are already implemented. Popular choices with regard to forest trees in Germany are 'Menzel' and 'vonWilpert'.

Start methods

  • Menzel implemented as described in Menzel (1997). Parameterized for 10 common tree species. Needs previous years chill days.
  • StdMeteo / ETCCDI a simple threshold based procedure as defined by the Expert Team on Climate Change Detection and Indices (cf. ETCCDI 2009 and Frich et al. 2002). Leading to quite early vegetation starts.
  • Ribes uva-crispa using leaf out of gooseberry as indicator. Developed by Germany's National Meteorological Service (Deutscher Wetterdienst, DWD). Presented in the section forestry of DWD's 'Climate Atlas'. It is more robust against early starts than common simple meteorological procedures.

End methods

  • vonWilpert based on von Wilpert (1990). Originally developed for "Picea abies" in the Black Forest but currently used for all tree species throughout Germany.
  • LWF-BROOK90 a reimplementation of the LWF-BROOK90 VBA version of vonWilpert (Hammel and Kennel 2001).
  • NuskeAlbert a very simple method inspired by standard climatological practices.
  • StdMeteo / ETCCDI a simple threshold based procedure as defined by the Expert Team on Climate Change Detection and Indices (cf. ETCCDI 2009 and Frich et al., 2002). Leading to quite late vegetation ends.

Download climate data from DWD (German Meteorological Service)

Germany's National Meteorological Service offers open meteo data in its Climate Data Center. The files are organized in deep folder structures and end with an arcane/legacy EOF character. The Function read.DWDdata()deals with all of that and returns a data.frame. Beware there might be missing values and inhomogeneities.

Note: Downloading 'historical' data from DWD with read.DWDdata() requires the package 'curl'.

Contributions

Further start and end methods or download functions are more than welcome!

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