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maintainer: "Nan Xiao"
email: "me@nanx.me"
from: "rocker/tidyverse:latest"
pandoc: false
sysdeps:
- libgsl-dev
- ghostscript
cran:
- rmdformats
- DT
- circlize
- c3net
- pbapply
- ggplot2
- ggthemes
- readr
- downloader
bioc:
- TCGAWorkflowData
- TCGAbiolinks
- SummarizedExperiment
- RTCGAToolbox
- gaia
- GenomicRanges
- ComplexHeatmap
- clusterProfiler
- minet
- rGADEM
- BSgenome.Hsapiens.UCSC.hg19
- motifStack
- MotIV
- ChIPseeker
- AnnotationHub
- ELMER
- EDASeq
- GO.db
- DO.db
- MotifDb
- biomaRt
- GenomeInfoDb
remotes:
- url::https://bioconductor.org/help/workflows/TCGAWorkflow/TCGAWorkflow_0.99.73.tar.gz