Open data, open science, open and decentralised publishing. Data wrangling, molecular biology, genomics and bioinformatics. Research scientist. Novice human.
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Seqera Labs
- Montréal, QC, Canada
- http://robsyme.com
- @robsyme
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nf-repeatmasking Public
Nextflow workflow for automatic repeat detection, classification and masking
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bioruby-chado Public
A library that allows you to pull ruby objects out of a Chado-schema database
Ruby 2
264 contributions in the last year
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Activity overview
Contribution activity
March 2023
Created 31 commits in 5 repositories
Created a pull request in nf-core/viralrecon that received 7 comments
Wrap params string in file method
When a custom kraken_db path is supplied, we were passing the string directly rather than wrapping it in a file()
function call. This enables us to…
+1
−1
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7
comments
Opened 11 other pull requests in 5 repositories
nf-core/testpipeline
2
merged
1
closed
nf-core/rnaseq
1
closed
2
merged
nf-core/modules
3
merged
nf-core/tools
1
open
nf-core/sarek
1
merged
Reviewed 9 pull requests in 6 repositories
nf-core/rnaseq
3 pull requests
nf-core/modules
2 pull requests
nf-core/sarek
1 pull request
seqeralabs/action-tower-launch
1 pull request
seqeralabs/nf-tower-docs
1 pull request
nf-core/viralrecon
1 pull request
Created an issue in nf-core/rnaseq that received 3 comments
Slack JSON improvements discussion
Description of feature
The assets/slackreport.json
file could be improved, and I wanted to give an opportunity for people to provide input before I…
3
comments