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HHblits web server guide

Ronesh Sharma edited this page Oct 6, 2018 · 3 revisions
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Use HHblits web-server to extract multiple sequence alignment (MSA) file (a3m format) in the following way:

-Upload query protein sequence to HHblits web-server, options: Max. number of iterations:1, other parameters: default

-Once server processes the task, from the Query Template MSA tab, download full A3M file. This is the MSA file, rename this file as hmmprofile.a3m