diff --git a/.github/workflows/root-docs-ci.yml b/.github/workflows/root-docs-ci.yml
index c5ec60d5be93c..1cd64060689c3 100644
--- a/.github/workflows/root-docs-ci.yml
+++ b/.github/workflows/root-docs-ci.yml
@@ -195,14 +195,12 @@ jobs:
         echo ${RWEBEOS_KT} | base64 -d > ${KT_FILE_NAME}
         kinit -p ${{ secrets.KRB5USER }}@${{ secrets.KRB5REALM }} -kt ${KT_FILE_NAME}
         cd ${DOC_DIR}/html/
+        rm -rf *.map # Intermediate files to create dot graphs
+        rm -rf *.md5 # As above
         xrdcp --parallel 64 -rf ./*.html ${EOS_ENDPOINT}/${EOS_BASE_PATH}/doc/${WEB_DIR_NAME} || failure=1
         rm -rf *.html
         xrdcp --parallel 64 -rf ./*.svg ${EOS_ENDPOINT}/${EOS_BASE_PATH}/doc/${WEB_DIR_NAME} || failure=1
         rm -rf *.svg
-        xrdcp --parallel 64 -rf ./*.map ${EOS_ENDPOINT}/${EOS_BASE_PATH}/doc/${WEB_DIR_NAME} || failure=1
-        rm -rf *.map
-        xrdcp --parallel 64 -rf ./*.md5 ${EOS_ENDPOINT}/${EOS_BASE_PATH}/doc/${WEB_DIR_NAME} || failure=1
-        rm -rf *.md5
         xrdcp --parallel 64 -rf ./ ${EOS_ENDPOINT}/${EOS_BASE_PATH}/doc/${WEB_DIR_NAME} || failure=1
         cd ..
         rm -r html
diff --git a/documentation/doxygen/Makefile b/documentation/doxygen/Makefile
index a9be04778a7eb..7b22aadb1a11a 100644
--- a/documentation/doxygen/Makefile
+++ b/documentation/doxygen/Makefile
@@ -29,6 +29,7 @@ export DOXYGEN_PYZDOC_PATH := $(DOXYGEN_OUTPUT_DIRECTORY)/pyzdoc
 export DOXYGEN_STRIP_FROM_PATH := $(DOXYGEN_STRIP_PATH) $(DOXYGEN_OUTPUT_DIRECTORY)
 export DOXYGEN_NUM_THREADS := 1
 export DOXYGEN_INPUT_FILTER := ./filter
+export DOXYGEN_HAVE_DOT := YES
 
 PYZ_DIR = $(DOXYGEN_SOURCE_DIRECTORY)/bindings/pyroot/pythonizations/python/ROOT/_pythonization