I can haz all the phylogenies
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README.md

brranching

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R client to fetch phylogenies from many places

To be included, with the associated function prefix:

Installation

Stable CRAN version

install.packages("brranching")

Or dev version

install.packages("devtools")
devtools::install_github("ropensci/brranching")
library("brranching")

Phylomatic

taxa <- c("Poa annua", "Phlox diffusa", "Helianthus annuus")
tree <- phylomatic(taxa=taxa, get = 'POST')
plot(tree, no.margin=TRUE)

plot of chunk unnamed-chunk-5

You can pass in up to about 5000 names. We can use taxize to get a random set of plant species names.

library("taxize")
spp <- names_list("species", 200)
out <- phylomatic(taxa = spp, get = "POST")
plot(out, show.tip.label = FALSE)

plot of chunk unnamed-chunk-6

Meta

  • Please report any issues or bugs.
  • License: MIT
  • Get citation information for brranching in R doing citation(package = 'brranching')
  • Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

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