diff --git a/DESCRIPTION b/DESCRIPTION index ed9759d..2e88b75 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: dbparser Title: 'DrugBank' Database XML Parser -Version: 1.2.0 +Version: 1.2.1 Authors@R: c( person("Mohammed", "Ali", email = "moh_fcis@yahoo.com", role = c("aut", "cre")), @@ -24,7 +24,7 @@ Imports: tibble, tools, XML -RoxygenNote: 7.1.1 +RoxygenNote: 7.2.0 Suggests: knitr, rmarkdown, diff --git a/R/dbparser.R b/R/dbparser.R index c931505..2b63a4a 100644 --- a/R/dbparser.R +++ b/R/dbparser.R @@ -40,5 +40,6 @@ #' (https://docs.ropensci.org/dbparser/articles/Database_Saving.html) #' #' @docType package +#' @keywords internal #' @name dbparser NULL diff --git a/R/drug_all_nodes_parser.R b/R/drug_all_nodes_parser.R index 6fcc9ec..b6ce722 100644 --- a/R/drug_all_nodes_parser.R +++ b/R/drug_all_nodes_parser.R @@ -159,6 +159,7 @@ run_all_parsers <- #' drug_element(save_table = FALSE) #' drug_element(c("drug_ahfs_codes", "drug_carriers")) #' } +#' @keywords internal #' @export drug_element <- function(elements_options = c("all"), @@ -804,6 +805,7 @@ drug_element <- #' \dontrun{ #' drug_element_options() #' } +#' @keywords internal #' @export drug_element_options <- function() { elements_options <- diff --git a/R/drugbank_metadata.R b/R/drugbank_metadata.R index f723d18..5f98e0a 100644 --- a/R/drugbank_metadata.R +++ b/R/drugbank_metadata.R @@ -8,6 +8,7 @@ #' \dontrun{ #' get_drugbank_version() #' } +#' @keywords internal #' @export get_drugbank_version <- function() { return(pkg_env$version) @@ -24,6 +25,7 @@ get_drugbank_version <- function() { #' \dontrun{ #' get_drugbank_exported_date() #' } +#' @keywords internal #' @export get_drugbank_exported_date <- function() { return(pkg_env$exported_date) @@ -41,6 +43,7 @@ get_drugbank_exported_date <- function() { #' \dontrun{ #' get_drugbank_metadata() #' } +#' @keywords internal #' @export get_drugbank_metadata <- function() { return(list(pkg_env$version, pkg_env$exported_date)) diff --git a/man/dbparser.Rd b/man/dbparser.Rd index 8809e7c..624d49c 100644 --- a/man/dbparser.Rd +++ b/man/dbparser.Rd @@ -50,3 +50,4 @@ reference/index (https://docs.ropensci.org/dbparser/reference/index.html) (https://docs.ropensci.org/dbparser/articles/Database_Saving.html) } +\keyword{internal} diff --git a/man/drug_element.Rd b/man/drug_element.Rd index 4a0e9ca..2f9b3b6 100644 --- a/man/drug_element.Rd +++ b/man/drug_element.Rd @@ -93,3 +93,4 @@ Other common: \code{\link{run_all_parsers}()} } \concept{common} +\keyword{internal} diff --git a/man/drug_element_options.Rd b/man/drug_element_options.Rd index 5ba405c..3434bf9 100644 --- a/man/drug_element_options.Rd +++ b/man/drug_element_options.Rd @@ -23,3 +23,4 @@ Other common: \code{\link{run_all_parsers}()} } \concept{common} +\keyword{internal} diff --git a/man/get_drugbank_exported_date.Rd b/man/get_drugbank_exported_date.Rd index 6dd800d..4131a03 100644 --- a/man/get_drugbank_exported_date.Rd +++ b/man/get_drugbank_exported_date.Rd @@ -18,3 +18,4 @@ exported date. get_drugbank_exported_date() } } +\keyword{internal} diff --git a/man/get_drugbank_metadata.Rd b/man/get_drugbank_metadata.Rd index b7d01d6..2c06839 100644 --- a/man/get_drugbank_metadata.Rd +++ b/man/get_drugbank_metadata.Rd @@ -18,3 +18,4 @@ exported date. get_drugbank_metadata() } } +\keyword{internal} diff --git a/man/get_drugbank_version.Rd b/man/get_drugbank_version.Rd index 09f1897..b82c899 100644 --- a/man/get_drugbank_version.Rd +++ b/man/get_drugbank_version.Rd @@ -17,3 +17,4 @@ drugbank version get_drugbank_version() } } +\keyword{internal}