From 64938ea91207f9e7f3705cce758966be8f98668a Mon Sep 17 00:00:00 2001 From: Najko Jahn Date: Sun, 8 Jan 2017 17:11:09 +0100 Subject: [PATCH] prepare new submission to CRAN because vignette build failed because of HTTP 500 errors --- DESCRIPTION | 2 +- README.Rmd | 3 +-- README.md | 7 +++---- vignettes/introducing-europepmc.Rmd | 3 +-- 4 files changed, 6 insertions(+), 9 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 612843e..af99087 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: europepmc Title: R Interface to the Europe PubMed Central RESTful Web Service -Version: 0.1.1.9000 +Version: 0.1.2 Authors@R: c( person("Najko", "Jahn", email = "najko.jahn@gmail.com", role = c("aut", "cre", "cph"))) diff --git a/README.Rmd b/README.Rmd index 4b032c8..8c1da2e 100644 --- a/README.Rmd +++ b/README.Rmd @@ -244,8 +244,7 @@ epmc_db('12368864', db = 'embl') ## Get text-mined terms Text-mined terms that can be accessed via Europe PMC are mapped against -controlled vocabularies such as [Gene -Ontology](http://www.ebi.ac.uk/QuickGO/). +controlled vocabularies like [Gene Ontology](http://www.geneontology.org/). Before retrieving these terms, please check availability and vocabularies first: diff --git a/README.md b/README.md index 3d459f0..38e7221 100644 --- a/README.md +++ b/README.md @@ -495,7 +495,7 @@ attr(my_data, "hit_count") #> [1] 6933 ``` -You may also use `epmc_profile`to get a summary of hit counts. +You may also use `epmc_profile` to retrieve a summary of hit counts. ```r @@ -709,7 +709,7 @@ epmc_refs('PMC3166943', data_src = 'pmc') #> 18 #> # ... with 13 more variables: title , authorString , #> # journalAbbreviation , issue , pubYear , volume , -#> # pageInfo , citedOrder , match , issn , essn , +#> # pageInfo , citedOrder , match , essn , issn , #> # publicationTitle , externalLink ``` @@ -764,8 +764,7 @@ epmc_db('12368864', db = 'embl') ## Get text-mined terms Text-mined terms that can be accessed via Europe PMC are mapped against -controlled vocabularies such as [Gene -Ontology](http://www.ebi.ac.uk/QuickGO/). +controlled vocabularies like [Gene Ontology](http://www.geneontology.org/). Before retrieving these terms, please check availability and vocabularies first: diff --git a/vignettes/introducing-europepmc.Rmd b/vignettes/introducing-europepmc.Rmd index 13f10ef..c045b8e 100644 --- a/vignettes/introducing-europepmc.Rmd +++ b/vignettes/introducing-europepmc.Rmd @@ -245,8 +245,7 @@ epmc_db('12368864', db = 'embl') ## Get text-mined terms Text-mined terms that can be accessed via Europe PMC are mapped against -controlled vocabularies such as [Gene -Ontology](http://www.ebi.ac.uk/QuickGO/). +controlled vocabularies like [Gene Ontology](http://www.geneontology.org/). Before retrieving these terms, please check availability and vocabularies first: