remove unnecessary braces from documentation

R/get_observations.R

@@ -20,7 +20,7 @@
 #'   \item "from_data" - cells for which abundance will be sampled are provided
 #'   by the user in a `data.frame` with three columns: "x", "y" and "time_step"
 #'   \item "monitoring_based" - cells from which abundance will be sampled
-#'   are provided by the user in a matrix object with two columns: “x” and “y”;
+#'   are provided by the user in a matrix object with two columns: "x" and "y";
 #'   abundance from given cell is then sampled by different virtual observers
 #'   in different time steps; whether a survey will be made by
 #'   the same observer for several years and whether it will not be made at all
@@ -37,36 +37,36 @@
 #' ("[`rbinom`][stats::rbinom()]") is used
 #' @param ... other necessary internal parameters:
 #' \itemize{
-#'   \item{`prop`
+#'   \item `prop`
 #'
 #'   numeric vector of length 1; proportion of cells to be sampled
 #'   (default `prop = 0.1`);
-#'   used when `type = "random_one_layer" or "random_all_layers"`,}
+#'   used when `type = "random_one_layer" or "random_all_layers"`,
 #'
-#'   \item{`points`
+#'   \item `points`
 #'
 #'   `data.frame` or `matrix` with 3 named numeric columns ("x", "y"
 #'   and "time_step") containing coordinates and time steps from which
-#'   observations should be obtained; used when `type = "from_data"`,}
+#'   observations should be obtained; used when `type = "from_data"`,
 #'
-#'   \item{`cells_coords`
+#'   \item `cells_coords`
 #'
 #'   `data.frame` or `matrix` with 2 named columns: "x" and "y"; survey plots
-#'   coordinates; used when `type = "monitoring_based"`}
+#'   coordinates; used when `type = "monitoring_based"`
 #'
-#'   \item{`prob`
+#'   \item `prob`
 #'
 #'    numeric vector of length 1; a parameter defining the shape of -
 #'    [`rgeom`][stats::rgeom()] distribution - it defines whether an observation
 #'    will be made by the same observer for several years and whether it
 #'    will not be made at all (default `prob = 0.3`);
-#'    used when `type = "monitoring_based"`}
+#'    used when `type = "monitoring_based"`
 #'
-#'   \item{`progress_bar`
+#'   \item `progress_bar`
 #'
 #'    logical vector of length 1; determines if progress bar for observational
 #'    process should be displayed (default `progress_bar = FALSE`);
-#'    used when `type = "monitoring_based"`}
+#'    used when `type = "monitoring_based"`
 #' }
 #'
 #' @return `data.frame` object with geographic coordinates, time steps,

R/initialise.R

@@ -44,11 +44,11 @@
 #' @param dens_dep character vector of length 1 specifying if the probability
 #' of settling in a target square is (case-sensitive, default `"K2N"`):
 #' \itemize{
-#'   \item{"none" - fully random,}
-#'   \item{"K" - proportional to the carrying capacity of a target square,}
-#'   \item{"K2N" - density-dependent, i.e. proportional to the ratio of
+#'   \item "none" - fully random,
+#'   \item "K" - proportional to the carrying capacity of a target square,
+#'   \item "K2N" - density-dependent, i.e. proportional to the ratio of
 #'   carrying capacity of a target square to the number of individuals
-#'   already present in a target square}
+#'   already present in a target square
 #' }
 #' @param border character vector of length 1 defining how to deal
 #' with borders (case-sensitive, default `"absorbing"`):

R/sim.R

@@ -56,12 +56,12 @@
 #' @return This function returns an object of class `sim_results` which is
 #' a list containing the following components:
 #' \itemize{
-#'   \item{`extinction` - `TRUE` if population is extinct or `FALSE` otherwise}
-#'   \item{`simulated_time` - number of simulated time steps without
-#'   the burn-in ones}
-#'   \item{`N_map` - 3-dimensional array representing spatio-temporal
+#'   \item `extinction` - `TRUE` if population is extinct or `FALSE` otherwise
+#'   \item `simulated_time` - number of simulated time steps without
+#'   the burn-in ones
+#'   \item `N_map` - 3-dimensional array representing spatio-temporal
 #'   variability in population numbers. The first two dimensions correspond to
-#'   the spatial aspect of the output and the third dimension represents time.}
+#'   the spatial aspect of the output and the third dimension represents time.
 #' }
 #'
 #' In case of a total extinction, a simulation is stopped before reaching