Programmatic interface to the Encyclopedia of Life - http://eol.org/
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README.md

Reol

Build Status codecov.io

Reol - Interface to the Encyclopedia for Life

Installation

Stable version from CRAN

install.packages("Reol")

or, Development version from GitHub

install.packages("devtools")
devtools::install_github("ropensci/reol")

Examples

library("Reol")
data(MyEOLs)

Provider count

ProviderCount(MyEOLs[6], verbose=TRUE)
#>                                                          [,1]
#> Integrated Taxonomic Information System (ITIS)              1
#> GBIF Nub Taxonomy                                           1
#> IUCN Red List (Species Assessed for Global Conservation)    1
#> NCBI Taxonomy                                               1
#> Species 2000 & ITIS Catalogue of Life: April 2013           1
#>           Integrated Taxonomic Information System (ITIS) 
#>                                                        1 
#>                                        GBIF Nub Taxonomy 
#>                                                        1 
#> IUCN Red List (Species Assessed for Global Conservation) 
#>                                                        1 
#>                                            NCBI Taxonomy 
#>                                                        1 
#>        Species 2000 & ITIS Catalogue of Life: April 2013 
#>                                                        1

Download data

res <- DownloadSearchedTaxa(c("Anolis_carolinensis", "Anolis garmani"), to.file=FALSE, exact=TRUE)
#> [1] "eol795869 saved as R object"
#> [1] "eol1055934 saved as R object"

Then parse

out <- GatherDataObjectInformation(res)
out[1:6, 1:6]
#>                 Taxon  eolID                     dataObjectID
#> 1 Anolis carolinensis 795869 e1034e748a8bc9e9828ddede77bc9bab
#> 2 Anolis carolinensis 795869 74c855fd7ec1b579505cf3774cd03bf5
#> 3 Anolis carolinensis 795869 d48f7b24ebac13339a43aea3ec524416
#> 4 Anolis carolinensis 795869 0ecf604ab616f4e7f895da90c861cf28
#> 5 Anolis carolinensis 795869 fcb91b611541d29d311bf8ea0bd112d3
#> 6 Anolis carolinensis 795869 5b9e32ea5f57e778ac1d9cadf7a7e738
#>   taxonConceptID                         dataType  mimeType
#> 1         795869 http://purl.org/dc/dcmitype/Text text/html
#> 2         795869 http://purl.org/dc/dcmitype/Text text/html
#> 3         795869 http://purl.org/dc/dcmitype/Text text/html
#> 4         795869 http://purl.org/dc/dcmitype/Text text/html
#> 5         795869 http://purl.org/dc/dcmitype/Text text/html
#> 6         795869 http://purl.org/dc/dcmitype/Text text/html

Meta

  • Please report any issues or bugs
  • License: GPL (>= 2)
  • Get citation information for Reol in R doing citation(package = 'Reol')