Shiny app to interact with USGS and other data
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README.md

usgs_app

Shiny app to interact with USGS data

See this gist for many examples of what to enter in the search box.

Package dependencies:

Install normally, with install.packages("packagename")

  • shiny
  • plyr
  • ggplot2
  • doMC
  • ape
  • ggphylo
  • RSQLite
  • DBI

Install from Github using the devtools package

  • taxize
  • rgbif
install.packages("devtools")
library(devtools)
install_github("taxize_", "ropensci", "local_sql")
library(taxize)
install_github("rgbif", "ropensci")
library(rgbif)

To sync code to a Shiny server:

  • Make any changes to code
  • Commit them
  • Push to github
  • Then cd .. out to parent directory above usgs_app repo, and rsync to the Shiny server

rsync -avz --delete usgs_app ropensci@glimmer.rstudio.com:~/ShinyApps/

...then enter the password for the server