Skip to content
Handy scripts for SPM
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
fiber_QA minor edits Oct 20, 2015
next_release initial release Feb 27, 2015
spm_png nii_makeDTI reveals TrackVis coordinate system Sep 3, 2016
.DS_Store nii_makeDTI reveals TrackVis coordinate system Sep 3, 2016
AtlasStatMap.m improve AtlasStatMap Feb 15, 2018
README.md test Apr 15, 2015
TPM4mm.nii initial release Feb 27, 2015
bmp_blend.m initial release Feb 27, 2015
bmp_contrast.m initial release Feb 27, 2015
bmp_mexicanhat.m initial release Feb 27, 2015
bmp_onCenter_offSurround.m initial release Feb 27, 2015
bmp_scramble.m initial release Feb 27, 2015
bmp_sinewave_1d.m initial release Feb 27, 2015
bmp_sinewave_2d.m initial release Feb 27, 2015
bmp_unsharpmask.m initial release Feb 27, 2015
bmp_yuv.m initial release Feb 27, 2015
cleanup.m initial release Feb 27, 2015
cmap2lut.m new script nii_complex2magPhase Jun 13, 2018
convert_ctp.m initial release Feb 27, 2015
dicm_sort.m
dilate_erode.m initial release Feb 27, 2015
disco_sm.png initial release Feb 27, 2015
extract.exe initial release Feb 27, 2015
extract_brain.m minor edits Oct 20, 2015
extractlx32 initial release Feb 27, 2015
extractlx64 initial release Feb 27, 2015
extractosx initial release Feb 27, 2015
fix_qform.m add nii_flipap to flip in Y dimension Feb 7, 2018
mni2fs_makegii.m better error feedback Nov 15, 2015
nii_3dcheckerboard.m new functions Sep 6, 2015
nii_anat.m initial release Feb 27, 2015
nii_atlas2nii.m add atlas2nii Jul 14, 2017
nii_batch12old.m tiff2nii updates, avoid conflicts with nii_preprocess Aug 4, 2016
nii_change_datatype.m use intercept/slope 0/1 for integers if sufficient range exists Jan 26, 2017
nii_cleanup5.m initial release Feb 27, 2015
nii_clipeven_old.m
nii_combine_mask.m initial release Feb 27, 2015
nii_complex2magPhase.m new script nii_complex2magPhase Jun 13, 2018
nii_contiguous.m update Jun 10, 2015
nii_coord2spheres.m Added nii_coord2spheres Jul 19, 2017
nii_cropVolumes.m Antialias filter for nii_scale_dims https://neurostars.org/t/subsampl… Oct 13, 2017
nii_dice.m
nii_dilate.m initial release Feb 27, 2015
nii_diploe.m Minor mods Nov 10, 2017
nii_dti2rgb.m update Jun 10, 2015
nii_dti_clean.m typo Mar 13, 2017
nii_dtibatch.m new script nii_complex2magPhase Jun 13, 2018
nii_enantiomorphic.m initial release Feb 27, 2015
nii_enat_norm.m New z2p and p2z functions Apr 5, 2018
nii_extract.m
nii_fileparts.m initial release Feb 27, 2015
nii_fixnames.m New DTI tools Mar 2, 2017
nii_fixslices.m Added nii_fixslices Aug 4, 2016
nii_flipap.m update notes Feb 7, 2018
nii_fliplr.m Minor mods Nov 10, 2017
nii_flipz.m initial release Feb 27, 2015
nii_fslflirt.m initial release Feb 27, 2015
nii_fslver.m new meanBvec Mar 10, 2017
nii_getTR.m initial release Feb 27, 2015
nii_gui.m
nii_i3m2nii.m new functions Sep 6, 2015
nii_isSPM12orNewer.m initial release Feb 27, 2015
nii_jaccard.m
nii_label.m initial release Feb 27, 2015
nii_loadhdrimg.m update Jun 10, 2015
nii_make3d.m tiff2nii updates, avoid conflicts with nii_preprocess Aug 4, 2016
nii_make3d_new.m dtibatch improved Aug 26, 2016
nii_make4d.m ClipBB supports topup Mar 11, 2015
nii_makeDTI.m test Oct 10, 2016
nii_makeseed.m initial release Feb 27, 2015
nii_mask.m new script nii_complex2magPhase Jun 13, 2018
nii_meanBvec.m new meanBvec Mar 10, 2017
nii_mean_stdev.m Small changes Apr 15, 2015
nii_mean_stdev_roi.m New scripts Nov 9, 2015
nii_merge.m Small changes Apr 15, 2015
nii_merge_dki.m easy merge for DKI files Sep 25, 2017
nii_merge_dki2k.m easy merge for DKI files Sep 25, 2017
nii_merge_dki2k.m~ New square matrix script Oct 1, 2017
nii_merge_dti.m update Apr 18, 2016
nii_mricro_roi2nii.m initial release Feb 27, 2015
nii_neper.m ClipBB supports topup Mar 11, 2015
nii_new.m
nii_nii2bvox.m New scripts Nov 9, 2015
nii_nii2gii.m
nii_nii2objMesh.m
nii_nii2powerOf2.m new functions Sep 6, 2015
nii_nii2stl.m add nii_flipap to flip in Y dimension Feb 7, 2018
nii_nii2voi.m initial release Feb 27, 2015
nii_nodz2node.m test Oct 10, 2016
nii_orderBval.m Sort by bvalue https://www.nitrc.org/forum/message.php?msg_id=22909 Nov 17, 2017
nii_p2z.m New z2p and p2z functions Apr 5, 2018
nii_plotBvec.m minor edits Oct 20, 2015
nii_qa_moco.m initial release Feb 27, 2015
nii_remove_haze.m Added nii_coord2spheres Jul 19, 2017
nii_render.m minor edits Oct 20, 2015
nii_reorient.m New function - nii_reorient Aug 8, 2017
nii_rescue_par.m add nii_flipap to flip in Y dimension Feb 7, 2018
nii_reslice1mm.m initial release Feb 27, 2015
nii_reslice2mm.m add traction to nii_dtibatch Mar 6, 2017
nii_reslice_target.m New z2p and p2z functions Apr 5, 2018
nii_reslice_target_thresh.m
nii_rgb_planar2packed.m
nii_savehdrimg.m update Jun 10, 2015
nii_scale_dims.m new script nii_complex2magPhase Jun 13, 2018
nii_segment4d.m Minor mods Nov 10, 2017
nii_setOrigin.m initial release Feb 27, 2015
nii_setOrigin12x.m remove dependencies from nii_preprocess Mar 15, 2017
nii_sform.m dtibatch improved Aug 26, 2016
nii_sqr_matrix.m New square matrix script Oct 1, 2017
nii_subtract_mask.m initial release Feb 27, 2015
nii_swaphdr.m initial release Feb 27, 2015
nii_thresh.m initial release Feb 27, 2015
nii_threshreslicecluster.m Added nii_nii2objMesh May 4, 2017
nii_tiff2nii.m tiff2nii updates, avoid conflicts with nii_preprocess Aug 4, 2016
nii_tight_crop.m new functions Sep 6, 2015
nii_timecourse_roi.m initial release Feb 27, 2015
nii_ungz.m Minor mods Nov 10, 2017
nii_unsharpmask.m New function Jun 22, 2015
nii_voi2nii.m initial release Feb 27, 2015
nii_z2p.m Warning message Apr 5, 2018
nii_zeronan.m add atlas2nii Jul 14, 2017
nii_zintensity.m initial release Feb 27, 2015
old_setOrigin12.m initial release Feb 27, 2015
pepper.jpg initial release Feb 27, 2015
photo.png initial release Feb 27, 2015
png2nii.m new functions Sep 6, 2015
stat_dprime.m initial release Feb 27, 2015
t1_fieldstrength.m initial release Feb 27, 2015
t1_fieldstrength.m.txt initial release Feb 27, 2015
t1_tissue.m initial release Feb 27, 2015
t2_contrast.m initial release Feb 27, 2015
t2_fieldstrength.m initial release Feb 27, 2015
t2_tissue.m initial release Feb 27, 2015
test.txt initial release Feb 27, 2015
timeShift.m update Jun 10, 2015
tr_flipangle.m minor edits Oct 20, 2015
tracktion strip tracktion Mar 7, 2017
voi2nii.m add atlas2nii Jul 14, 2017

README.md

About

This is a collection of Matlab scripts that can help with using SPM and FSL. These scripts are also available from my lab website which includes a brief description about each script.

Versions
First Header Second Header
Content Cell Content Cell
Content Cell Content Cell

alt tag

You can’t perform that action at this time.