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HFR_Progs: High Frequency Radar Program Suite

$Id: README 351 2007-03-09 01:31:02Z dmk $

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More detailed documentation will eventually be available at:

Project webpage: https://github.com/rowg/hfrprogs

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This suite covers basic processing and analysis of HF Radar data.  It
is an updated and expanded version of HFRadarmap (by Mike Cook) or
HFRC (by David Kaplan).  The principal authors of this suite are David
Kaplan (UCSC), Mike Cook (NPS) and Dan Atwater (UCSC/NPS).

Much of this toolbox is released under the Gnu General Public License,
the text of which is included with the toolbox at
HFR_Progs/license.gpl.txt.  In a nutshell, this license says that the
code may be modified and redistributed freely, provided that all
modifications to the source code are also made freely available.

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Installation Quickstart:
------------------------

These instructions are for suitably configured Unix-like systems
(e.g., Linux, Mac OSX).

1) Unpack

$ unzip HFR_Progs-VERSION.zip

2) Configure Matlab

$ cd HFR_Progs
$ make
$ make all_gshhs
$ cd matlab
$ matlab
MATLAB>> HFRPdemo

3) Configure Perl (if desired)

$ sudo perl -MCPAN -e "install 'MODULE::NAME'"

If using the Perl scripts, at a minimum the following modules are
necessary: Date::Calc, List::Compare, Net::SSH, Net::SCP,
Convert::ASN1

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Installation:
-------------

1) Unpack the suite in a suitable location

The suite is distributed in a zipped archive.  On unix-like systems,
this can be expanded by:

$ unzip HFR_Progs-VERSION.zip

This will create a directory called HFR_Progs-VERSION with the suite
inside.

2) Install the external Matlab packages

The core of this suite is the Matlab functions and scripts.  This code
depends on several freely available software packages: m_map, openMA,
t_tide, arrow, mexnc.  All but m_map are to one degree or another
optional.  These packages can be downloaded off the web and placed in
the HFR_Progs/matlab/external_matlab_packages directory.

To ease installation of these packages, we have created a Makefile
that will automatically download and install the packages on suitably
configured systems.  These systems must have make, wget, tar and unzip
installed.

Assuming that these packages are installed, one can download and
install m_map, openMA, t_tide and arrow with:

$ cd HFR_Progs
$ make

You may also want to use the high definition coastlines with m_map:

$ make all_gshhs

If you want to generate netCDF files for use with Gnome, then you will
need to install the netCDF package and the mexnc Matlab interface for
netCDF.  Installing netCDF is fairly straightforward and explained at
http://www.unidata.ucar.edu/software/netcdf/.  Once installed,
installing and compiling mexnc may be possible with:

$ make all_mexnc
$ make compile_mexnc NETCDF=/PATH/TO/NETCDF

This requires a working mex executable.

3) Install Perl modules

Perl may be useful for moving files around and converting some file
formats.  It is not required for using the Matlab parts of the
toolbox.

If you wish to use the Perl scripts, then certain Perl modules must be
installed (it is assumed Perl itself is already installed).  The
appropriate way to install these packages depends on the system, but
the following should work on many systems:

$ sudo perl -MCPAN -e "install 'MODULE::NAME'"

or perhaps

$ su
$ perl -MCPAN -e "install 'MODULE::NAME'"

At a minimum, the following modules are necessary: Date::Calc,
List::Compare, Net::SSH, Net::SCP, Convert::ASN1

4) Running matlab

To use the Matlab toolbox, the HFR_Progs/matlab directory and most
subdirectories must be on the Matlab path.  One way to achieve this is
by starting Matlab from the HFR_Progs/matlab directory.  If Matlab is
started from another directory, then the following should add the
appropriate directories (and perform a couple of basic tasks, such as
initializing the random number generator):

MATLAB>> cd HFR_Progs/matlab
MATLAB>> startup

After this has been done, you can change to any working directory and
the toolbox will be available.  You could also modify
HFR_Progs/matlab/startup.m to fit your needs.

There is a demonstration of the toolbox along with some sample data in
HFR_Progs/matlab/demo:

MATLAB>> HFRPdemo

We are in the process of writing drivers that automate basic
processing of HF Radar data.  These can be found in
HFR_Progs/matlab/drivers.

There are a number of readme files inside the HFR_Progs/matlab
directory and subdirectories that provide additional information about
specific aspects of the toolbox.


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Programs for analysis and visualization of oceanographic HF radar data

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