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R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.
R package porting Ripser-based persistent homology calculation engines from C++ via Rcpp. Currently ports Ripser (Vietoris-Rips complex) and Cubical Ripser (cubical complex).
ggplot2 extension to visualize persistent homology.
R package that provides complex systems datasets from the Colorado Index of Complex Networks (ICON) at https://icon.colorado.edu/.
Visualize alpha-helical peptide sequences in R using helical wheels and wenxiang diagrams. See https://doi.org/10.21105/joss.01008 for more details.
Solutions for annual Advent of Code challenge hosted at http://www.adventofcode.com/.
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