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README.md

GeneEvolve

A fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data

This work is published in Bioinformatics (2017), click here to download it.

GeneEvolve is a user-friendly and efficient population genetics simulator that handles complex evolutionary scenarios and generates individual-level phenotypes and realistic whole-genome sequence or SNP data. GeneEvolve runs forward-in-time, which allows it to provide a wide range of scenarios for mating systems, selection, population size and structure, migration, recombination, and environmental effects.

Download

To download “GeneEvolve”, you can push the green button “Clone or Download” and then “Download ZIP”.

Or, you can type the following commands in the terminal:

git clone https://github.com/rtahmasbi/GeneEvolve
cd GeneEvolve

Or,

wget https://github.com/rtahmasbi/GeneEvolve/archive/master.zip
unzip master
cd GeneEvolve-master

Binary files

The compiled files for Linux and Mac users are availible in the main direcory: GeneEvolve_Linux and GeneEvolve_Mac

Compile

To compile GeneEvolve, run the following commands:

make
cd bin
./GeneEvolve --help

Documentation

The Documentation file is available in the main directory: GeneEvolveDocumentation.pdf.

Examples

There is Examples.zip file in the main directory. Detailed explanation for using these examples are in the documentation file: GeneEvolveDocumentation.pdf.

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A fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data

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