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feat!: base specific hop parameters in homopoly-pair-hmm #480

merged 2 commits into from Feb 23, 2022


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@tedil tedil commented Feb 23, 2022

build_transition_table now expects something that implements the trait BaseSpecificHopParameters instead of HopParameters, since the latter can be expressed as the first (i.e. there's a default impl of BaseSpecificHopParameters for anything that implements HopParameters which just uses the base-agnostic homopolymer run start / extend probabilities)

@johanneskoester johanneskoester changed the title Base specific homopoly-pair-hmm feat!: base specific hop parameters in homopoly-pair-hmm Feb 23, 2022
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Coverage Status

Coverage decreased (-0.01%) to 88.764% when pulling 1b09989 on tedil:base-specific-hphmm into 8a900a2 on rust-bio:master.

@johanneskoester johanneskoester merged commit cf75b6c into rust-bio:master Feb 23, 2022
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This was referenced Feb 23, 2022
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3 participants