A particle tracking libary written in MATLAB
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README.md

README.md

Particle Tracking

A single particle tracking library written in MATLAB.

Files:

autoTrack

Automatically imports all tif files in a directory using importMovie, tracks using findParticle, and saves the movie and tracked arrays to files. Has an option of importing the movie in chunks, for times when the entire movie is too large to fit into memory. This results in several movie and tracked files.

findParticle

Contains the actual tracking algorithm.

playMovie

Plays a movie imported using importMovie. Can be used to overlay the tracking onto the actual images.

superTrack

Script that utilizes autotrack to track all movies in a data set.

loadTiffs

Loads movies which are saved as multiple single-image tiff files in a directory.

loadTiffStack

Loads movies which are saved as multi-image tiffs.