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executable file 38 lines (35 sloc) 1.326 kb
#!/usr/bin/env python
try:
from setuptools import setup, find_packages
from setuptools import Extension
from Cython.Distutils import build_ext
except ImportError:
print '(WARNING: importing distutils, not setuptools!)'
from distutils.core import setup
import numpy as np
ext_modules = [ Extension( 'pique.mapmaker', [ 'pique/mapmaker.pyx' ] ),
Extension( 'pique.peak' , [ 'pique/peak.pyx' ] ) ]
setup(name = 'pique',
version = '0.1.7',
description = 'An efficient peak finder for high coverage ChIP-seq experiments.',
#long_description=read('README'),
author = 'Russell Neches',
author_email = 'ryneches@ucdavis.edu',
url = 'https://github.com/ryneches/pique',
packages = [ 'pique' ],
license = 'BSD',
test_suite = 'nose.collector',
tests_require=['nose'],
cmdclass = { 'build_ext' : build_ext },
include_dirs = [ np.get_include() ],
ext_modules = ext_modules,
classifiers = [
'Development Status :: 4 - Beta',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Programming Language :: Cython',
'Programming Language :: Python :: 2.7',
'License :: OSI Approved :: BSD License'
],
requires = [ 'numpy', 'scipy', 'cython', 'pysam' ],
scripts = [ 'scripts/pique' ]
)
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