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A tool for manual pointwise deformable registration using bigdataviewer.
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README.md

bigwarp

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A tool for manual pointwise deformable registration using bigdataviewer.

If you are using this tool in your work, please do not forget to cite John Bogovic's paper where he first introduces BigWarp:

JA Bogovic, P Hanslovsky, A Wong, S Saalfeld, "Robust registration of calcium images by learned contrast synthesis", In Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on, 1123-1126, DOI: 10.1109/ISBI.2016.7493463.

See the main bigwarp page for details.

Also available on conda as standalone version outside of Fiji:

# Installation
conda install -c hanslovsky bigwarp

# Run
bigwarp <moving-image> <target-image> <optional-landmarks>
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