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Francesco Iorio
Francesco Iorio committed Jan 18, 2016
1 parent 7a9aecd commit 117c1faf486a1e131ea4eff18e0c1017501bee41
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.Rproj.user
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Package: SLAPenrich
Type: Package
Title: Sample-population Level Analysis of Pathway enrichments (Title Case)
Version: 0.1
Date: 2016-01-15
Author: Francesco Iorio
Maintainer: Francesco Iorio <iorio@ebi.ac.uk>
Description: SLAPenrich implements a statistical framework to identify pathways that tend to be recurrently genomically altered across a collection of samples. Differently from traditional over-recurrence analyses, SLAPenrich does not require the genes belonging to a given pathway to be statistically enriched among those altered in the individual samples. Additionally it assumes that a pathway might be disregulated in a given sample even if only one of its composing genes is genomically altered in that sample.
License: MIT
Imports: stringr
Imports: poibin
Imports: pheatmap
Imports: qvalue
Imports: TxDb.Hsapiens.UCSC.hg19.knownGene
Imports: org.Hs.eg.db
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export(SLAPE.readDataset)
export(SLAPE.Analyse)
export(SLAPE.write.table)
export(SLAPE.pathVis)
export(SLAPE.serialPathVis)
export(SLAPE.coreComponents)
import('stringr')
import('poibin')
import('pheatmap')
import('qvalue')
import('TxDb.Hsapiens.UCSC.hg19.knownGene')
import('org.Hs.eg.db')
import('igraph')
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