diff --git a/decoupler/pre.py b/decoupler/pre.py index 2e25f9a..0ba9296 100644 --- a/decoupler/pre.py +++ b/decoupler/pre.py @@ -26,7 +26,7 @@ def extract(mat, use_raw=True, verbose=False, dtype=np.float32): Returns ------- m : csr_matrix - Sparse matrix contianing molecular readouts or statistics. + Sparse matrix containing molecular readouts or statistics. r : ndarray Array of sample names. c : ndarray diff --git a/docs/source/index.rst b/docs/source/index.rst index bcc4b9a..fa9fcc7 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -35,4 +35,5 @@ The data redistributed by OmniPath does not have a license, each original resour notebooks/msigdb notebooks/pseudobulk api + release_notes reference \ No newline at end of file diff --git a/docs/source/release_notes.rst b/docs/source/release_notes.rst new file mode 100644 index 0000000..0062894 --- /dev/null +++ b/docs/source/release_notes.rst @@ -0,0 +1,21 @@ +Release notes +============= + +1.1.0 +----- +Bug fixes +~~~~~~~~~ +- Fixed ``get_pseudobulk`` errors. +- Fixed ``get_progeny`` to correctly return non duplicate entries. +- Fixed ``run_viper`` parallelization error. +- Fixed ``run_ora`` to correctly deal with random ties. + +Changes +~~~~~~~~ +- ``get_dorothea`` now returns an ordered dataframe. +- ``get_contrast`` now prints warnings instead of returning an empty dataframe. + +Additions +~~~~~~~~~ +- Added ``get_top_targets`` util function. +- Added ``format_contrast_results`` util function.