From a6ee28b0e9cffae69f1fba60df78f64c24ffd082 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 19 Dec 2023 21:08:27 +0000 Subject: [PATCH] Bump paramiko from 3.3.1 to 3.4.0 Bumps [paramiko](https://github.com/paramiko/paramiko) from 3.3.1 to 3.4.0. - [Commits](https://github.com/paramiko/paramiko/compare/3.3.1...3.4.0) --- updated-dependencies: - dependency-name: paramiko dependency-type: indirect ... Signed-off-by: dependabot[bot] --- poetry.lock | 188 +++------------------------------------------------- 1 file changed, 10 insertions(+), 178 deletions(-) diff --git a/poetry.lock b/poetry.lock index 59e8d97c3..30139199f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. [[package]] name = "accessible-pygments" version = "0.0.4" description = "A collection of accessible pygments styles" -category = "dev" optional = false python-versions = "*" files = [ @@ -19,7 +18,6 @@ pygments = ">=1.5" name = "alabaster" version = "0.7.13" description = "A configurable sidebar-enabled Sphinx theme" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -31,7 +29,6 @@ files = [ name = "anyio" version = "4.0.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -53,7 +50,6 @@ trio = ["trio (>=0.22)"] name = "appnope" version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" -category = "dev" optional = false python-versions = "*" files = [ @@ -65,7 +61,6 @@ files = [ name = "argon2-cffi" version = "23.1.0" description = "Argon2 for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -86,7 +81,6 @@ typing = ["mypy"] name = "argon2-cffi-bindings" version = "21.2.0" description = "Low-level CFFI bindings for Argon2" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -124,7 +118,6 @@ tests = ["pytest"] name = "arrow" version = "1.3.0" description = "Better dates & times for Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -138,13 +131,12 @@ types-python-dateutil = ">=2.8.10" [package.extras] doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"] -test = ["dateparser (>=1.0.0,<2.0.0)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (>=3.0.0,<4.0.0)"] +test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"] [[package]] name = "asttokens" version = "2.4.1" description = "Annotate AST trees with source code positions" -category = "dev" optional = false python-versions = "*" files = [ @@ -163,7 +155,6 @@ test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"] name = "async-lru" version = "2.0.4" description = "Simple LRU cache for asyncio" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -178,7 +169,6 @@ typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""} name = "attrs" version = "23.1.0" description = "Classes Without Boilerplate" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -197,7 +187,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte name = "babel" version = "2.13.1" description = "Internationalization utilities" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -215,7 +204,6 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] name = "bcrypt" version = "4.0.1" description = "Modern password hashing for your software and your servers" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -250,7 +238,6 @@ typecheck = ["mypy"] name = "beautifulsoup4" version = "4.12.2" description = "Screen-scraping library" -category = "main" optional = false python-versions = ">=3.6.0" files = [ @@ -269,7 +256,6 @@ lxml = ["lxml"] name = "bleach" version = "6.1.0" description = "An easy safelist-based HTML-sanitizing tool." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -288,7 +274,6 @@ css = ["tinycss2 (>=1.1.0,<1.3)"] name = "boltons" version = "23.1.1" description = "When they're not builtins, they're boltons." -category = "main" optional = false python-versions = "*" files = [ @@ -300,7 +285,6 @@ files = [ name = "bump2version" version = "1.0.1" description = "Version-bump your software with a single command!" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -312,7 +296,6 @@ files = [ name = "certifi" version = "2023.11.17" description = "Python package for providing Mozilla's CA Bundle." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -324,7 +307,6 @@ files = [ name = "cffi" version = "1.16.0" description = "Foreign Function Interface for Python calling C code." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -389,7 +371,6 @@ pycparser = "*" name = "charset-normalizer" version = "3.3.2" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "main" optional = false python-versions = ">=3.7.0" files = [ @@ -489,7 +470,6 @@ files = [ name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -501,7 +481,6 @@ files = [ name = "comm" version = "0.2.0" description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -519,7 +498,6 @@ test = ["pytest"] name = "contourpy" version = "1.2.0" description = "Python library for calculating contours of 2D quadrilateral grids" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -583,7 +561,6 @@ test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"] name = "cryptography" version = "41.0.5" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -629,7 +606,6 @@ test-randomorder = ["pytest-randomly"] name = "cycler" version = "0.12.1" description = "Composable style cycles" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -645,7 +621,6 @@ tests = ["pytest", "pytest-cov", "pytest-xdist"] name = "debugpy" version = "1.8.0" description = "An implementation of the Debug Adapter Protocol for Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -673,7 +648,6 @@ files = [ name = "decorator" version = "5.1.1" description = "Decorators for Humans" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -685,7 +659,6 @@ files = [ name = "defusedxml" version = "0.7.1" description = "XML bomb protection for Python stdlib modules" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -697,7 +670,6 @@ files = [ name = "dill" version = "0.3.7" description = "serialize all of Python" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -712,7 +684,6 @@ graph = ["objgraph (>=1.7.2)"] name = "docutils" version = "0.20.1" description = "Docutils -- Python Documentation Utilities" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -724,7 +695,6 @@ files = [ name = "epam-indigo" version = "1.14.0" description = "Indigo universal cheminformatics toolkit" -category = "main" optional = true python-versions = ">=3.6.0" files = [ @@ -740,7 +710,6 @@ files = [ name = "et-xmlfile" version = "1.1.0" description = "An implementation of lxml.xmlfile for the standard library" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -752,7 +721,6 @@ files = [ name = "exceptiongroup" version = "1.2.0" description = "Backport of PEP 654 (exception groups)" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -767,7 +735,6 @@ test = ["pytest (>=6)"] name = "executing" version = "2.0.1" description = "Get the currently executing AST node of a frame, and other information" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -782,7 +749,6 @@ tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipyth name = "face" version = "20.1.1" description = "A command-line application framework (and CLI parser). Friendly for users, full-featured for developers." -category = "main" optional = false python-versions = "*" files = [ @@ -798,7 +764,6 @@ boltons = ">=20.0.0" name = "fastjsonschema" version = "2.19.0" description = "Fastest Python implementation of JSON schema" -category = "dev" optional = false python-versions = "*" files = [ @@ -813,7 +778,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc name = "fonttools" version = "4.45.0" description = "Tools to manipulate font files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -879,7 +843,6 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] name = "fqdn" version = "1.5.1" description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers" -category = "dev" optional = false python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4" files = [ @@ -891,7 +854,6 @@ files = [ name = "future" version = "0.18.3" description = "Clean single-source support for Python 3 and 2" -category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -902,7 +864,6 @@ files = [ name = "glom" version = "23.4.0" description = "A declarative object transformer and formatter, for conglomerating nested data." -category = "main" optional = false python-versions = "*" files = [ @@ -922,7 +883,6 @@ yaml = ["PyYAML"] name = "idna" version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -934,7 +894,6 @@ files = [ name = "igraph" version = "0.11.3" description = "High performance graph data structures and algorithms" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -992,7 +951,6 @@ test-musl = ["cairocffi (>=1.2.0)", "networkx (>=2.5)", "pytest (>=7.0.1)", "pyt name = "imagesize" version = "1.4.1" description = "Getting image size from png/jpeg/jpeg2000/gif file" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -1004,7 +962,6 @@ files = [ name = "importlib-metadata" version = "6.8.0" description = "Read metadata from Python packages" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1024,7 +981,6 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs name = "importlib-resources" version = "6.1.1" description = "Read resources from Python packages" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1043,7 +999,6 @@ testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", name = "insipid-sphinx-theme" version = "0.4.2" description = "An insipid Sphinx theme" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1060,7 +1015,6 @@ sphinx = ">=5" name = "ipykernel" version = "6.27.0" description = "IPython Kernel for Jupyter" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1074,7 +1028,7 @@ comm = ">=0.1.1" debugpy = ">=1.6.5" ipython = ">=7.23.1" jupyter-client = ">=6.1.12" -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" matplotlib-inline = ">=0.1" nest-asyncio = "*" packaging = "*" @@ -1094,7 +1048,6 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio" name = "ipython" version = "8.17.2" description = "IPython: Productive Interactive Computing" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -1133,7 +1086,6 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.22)", "pa name = "ipython-genutils" version = "0.2.0" description = "Vestigial utilities from IPython" -category = "dev" optional = false python-versions = "*" files = [ @@ -1145,7 +1097,6 @@ files = [ name = "isodate" version = "0.6.1" description = "An ISO 8601 date/time/duration parser and formatter" -category = "main" optional = true python-versions = "*" files = [ @@ -1160,7 +1111,6 @@ six = "*" name = "isoduration" version = "20.11.0" description = "Operations with ISO 8601 durations" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1175,7 +1125,6 @@ arrow = ">=0.15.0" name = "jedi" version = "0.19.1" description = "An autocompletion tool for Python that can be used for text editors." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1195,7 +1144,6 @@ testing = ["Django", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] name = "jinja2" version = "3.1.2" description = "A very fast and expressive template engine." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1213,7 +1161,6 @@ i18n = ["Babel (>=2.7)"] name = "json5" version = "0.9.14" description = "A Python implementation of the JSON5 data format." -category = "dev" optional = false python-versions = "*" files = [ @@ -1228,7 +1175,6 @@ dev = ["hypothesis"] name = "jsonpointer" version = "2.4" description = "Identify specific nodes in a JSON document (RFC 6901)" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*" files = [ @@ -1240,7 +1186,6 @@ files = [ name = "jsonschema" version = "4.20.0" description = "An implementation of JSON Schema validation for Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1270,7 +1215,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- name = "jsonschema-specifications" version = "2023.11.1" description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1285,7 +1229,6 @@ referencing = ">=0.31.0" name = "jupyter-client" version = "8.6.0" description = "Jupyter protocol implementation and client libraries" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1295,7 +1238,7 @@ files = [ [package.dependencies] importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""} -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" python-dateutil = ">=2.8.2" pyzmq = ">=23.0" tornado = ">=6.2" @@ -1309,7 +1252,6 @@ test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pyt name = "jupyter-contrib-core" version = "0.4.2" description = "Common utilities for jupyter-contrib projects." -category = "dev" optional = false python-versions = "*" files = [ @@ -1330,7 +1272,6 @@ testing-utils = ["mock", "nose"] name = "jupyter-contrib-nbextensions" version = "0.7.0" description = "A collection of Jupyter nbextensions." -category = "dev" optional = false python-versions = "*" files = [] @@ -1361,7 +1302,6 @@ resolved_reference = "374defd124b636e3337ef8e6249f3c67da6982b8" name = "jupyter-core" version = "5.5.0" description = "Jupyter core package. A base package on which Jupyter projects rely." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1382,7 +1322,6 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] name = "jupyter-events" version = "0.9.0" description = "Jupyter Event System library" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1408,7 +1347,6 @@ test = ["click", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.19.0)", "p name = "jupyter-highlight-selected-word" version = "0.2.0" description = "Jupyter notebook extension that enables highlighting every instance of the current word in the notebook." -category = "dev" optional = false python-versions = "*" files = [ @@ -1420,7 +1358,6 @@ files = [ name = "jupyter-lsp" version = "2.2.0" description = "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1436,7 +1373,6 @@ jupyter-server = ">=1.1.2" name = "jupyter-nbextensions-configurator" version = "0.6.3" description = "jupyter serverextension providing configuration interfaces for nbextensions." -category = "dev" optional = false python-versions = "*" files = [ @@ -1458,7 +1394,6 @@ test = ["jupyter-contrib-core[testing-utils]", "mock", "nose", "requests", "sele name = "jupyter-server" version = "2.11.0" description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1471,7 +1406,7 @@ anyio = ">=3.1.0" argon2-cffi = "*" jinja2 = "*" jupyter-client = ">=7.4.4" -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" jupyter-events = ">=0.9.0" jupyter-server-terminals = "*" nbconvert = ">=6.4.4" @@ -1495,7 +1430,6 @@ test = ["flaky", "ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-sc name = "jupyter-server-terminals" version = "0.4.4" description = "A Jupyter Server Extension Providing Terminals." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1515,7 +1449,6 @@ test = ["coverage", "jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-cov", name = "jupyterlab" version = "4.0.9" description = "JupyterLab computational environment" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1548,7 +1481,6 @@ test = ["coverage", "pytest (>=7.0)", "pytest-check-links (>=0.7)", "pytest-cons name = "jupyterlab-pygments" version = "0.2.2" description = "Pygments theme using JupyterLab CSS variables" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1560,7 +1492,6 @@ files = [ name = "jupyterlab-server" version = "2.25.2" description = "A set of server components for JupyterLab and JupyterLab like applications." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1587,7 +1518,6 @@ test = ["hatch", "ipykernel", "openapi-core (>=0.18.0,<0.19.0)", "openapi-spec-v name = "kiwisolver" version = "1.4.5" description = "A fast implementation of the Cassowary constraint solver" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1701,7 +1631,6 @@ files = [ name = "lxml" version = "4.9.3" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" files = [ @@ -1809,7 +1738,6 @@ source = ["Cython (>=0.29.35)"] name = "markupsafe" version = "2.1.3" description = "Safely add untrusted strings to HTML/XML markup." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1879,7 +1807,6 @@ files = [ name = "matplotlib" version = "3.8.2" description = "Python plotting package" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1929,7 +1856,6 @@ python-dateutil = ">=2.7" name = "matplotlib-inline" version = "0.1.6" description = "Inline Matplotlib backend for Jupyter" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1944,7 +1870,6 @@ traitlets = "*" name = "mistune" version = "3.0.2" description = "A sane and fast Markdown parser with useful plugins and renderers" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1956,7 +1881,6 @@ files = [ name = "nbclient" version = "0.9.0" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." -category = "dev" optional = false python-versions = ">=3.8.0" files = [ @@ -1966,7 +1890,7 @@ files = [ [package.dependencies] jupyter-client = ">=6.1.12" -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" nbformat = ">=5.1" traitlets = ">=5.4" @@ -1979,7 +1903,6 @@ test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>= name = "nbconvert" version = "7.11.0" description = "Converting Jupyter Notebooks" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2018,7 +1941,6 @@ webpdf = ["playwright"] name = "nbformat" version = "5.9.2" description = "The Jupyter Notebook format" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2040,7 +1962,6 @@ test = ["pep440", "pre-commit", "pytest", "testpath"] name = "nbsphinx" version = "0.9.4" description = "" -category = "dev" optional = false python-versions = ">=3.6" files = [] @@ -2064,7 +1985,6 @@ resolved_reference = "f1ef974f38281b53790a3d5e86c7f56aee808ca9" name = "nest-asyncio" version = "1.5.8" description = "Patch asyncio to allow nested event loops" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -2076,7 +1996,6 @@ files = [ name = "notebook" version = "6.4.12" description = "A web-based notebook environment for interactive computing" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2110,7 +2029,6 @@ test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixs name = "notebook-shim" version = "0.2.3" description = "A shim layer for notebook traits and config" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2128,7 +2046,6 @@ test = ["pytest", "pytest-console-scripts", "pytest-jupyter", "pytest-tornasync" name = "numpy" version = "1.26.2" description = "Fundamental package for array computing in Python" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -2174,7 +2091,6 @@ files = [ name = "openbabel" version = "3.1.1.1" description = "Python interface to the Open Babel chemistry library" -category = "main" optional = true python-versions = "*" files = [ @@ -2185,7 +2101,6 @@ files = [ name = "openpyxl" version = "3.1.2" description = "A Python library to read/write Excel 2010 xlsx/xlsm files" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -2200,7 +2115,6 @@ et-xmlfile = "*" name = "overrides" version = "7.4.0" description = "A decorator to automatically detect mismatch when overriding a method." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2212,7 +2126,6 @@ files = [ name = "packaging" version = "23.2" description = "Core utilities for Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2224,7 +2137,6 @@ files = [ name = "pandas" version = "2.1.3" description = "Powerful data structures for data analysis, time series, and statistics" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -2293,7 +2205,6 @@ xml = ["lxml (>=4.8.0)"] name = "pandocfilters" version = "1.5.0" description = "Utilities for writing pandoc filters in python" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2303,14 +2214,13 @@ files = [ [[package]] name = "paramiko" -version = "3.3.1" +version = "3.4.0" description = "SSH2 protocol library" -category = "main" optional = false python-versions = ">=3.6" files = [ - {file = "paramiko-3.3.1-py3-none-any.whl", hash = "sha256:b7bc5340a43de4287bbe22fe6de728aa2c22468b2a849615498dd944c2f275eb"}, - {file = "paramiko-3.3.1.tar.gz", hash = "sha256:6a3777a961ac86dbef375c5f5b8d50014a1a96d0fd7f054a43bc880134b0ff77"}, + {file = "paramiko-3.4.0-py3-none-any.whl", hash = "sha256:43f0b51115a896f9c00f59618023484cb3a14b98bbceab43394a39c6739b7ee7"}, + {file = "paramiko-3.4.0.tar.gz", hash = "sha256:aac08f26a31dc4dffd92821527d1682d99d52f9ef6851968114a8728f3c274d3"}, ] [package.dependencies] @@ -2327,7 +2237,6 @@ invoke = ["invoke (>=2.0)"] name = "parso" version = "0.8.3" description = "A Python Parser" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2343,7 +2252,6 @@ testing = ["docopt", "pytest (<6.0.0)"] name = "pexpect" version = "4.8.0" description = "Pexpect allows easy control of interactive console applications." -category = "dev" optional = false python-versions = "*" files = [ @@ -2358,7 +2266,6 @@ ptyprocess = ">=0.5" name = "pillow" version = "10.1.0" description = "Python Imaging Library (Fork)" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -2426,7 +2333,6 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa name = "platformdirs" version = "4.0.0" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2442,7 +2348,6 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4)", "pytest-co name = "prometheus-client" version = "0.19.0" description = "Python client for the Prometheus monitoring system." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2457,7 +2362,6 @@ twisted = ["twisted"] name = "prompt-toolkit" version = "3.0.41" description = "Library for building powerful interactive command lines in Python" -category = "dev" optional = false python-versions = ">=3.7.0" files = [ @@ -2472,7 +2376,6 @@ wcwidth = "*" name = "psutil" version = "5.9.6" description = "Cross-platform lib for process and system monitoring in Python." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ @@ -2501,7 +2404,6 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"] name = "ptyprocess" version = "0.7.0" description = "Run a subprocess in a pseudo terminal" -category = "dev" optional = false python-versions = "*" files = [ @@ -2513,7 +2415,6 @@ files = [ name = "pure-eval" version = "0.2.2" description = "Safely evaluate AST nodes without side effects" -category = "dev" optional = false python-versions = "*" files = [ @@ -2528,7 +2429,6 @@ tests = ["pytest"] name = "pycparser" version = "2.21" description = "C parser in Python" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -2540,7 +2440,6 @@ files = [ name = "pycurl" version = "7.45.2" description = "PycURL -- A Python Interface To The cURL library" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -2551,7 +2450,6 @@ files = [ name = "pydata-sphinx-theme" version = "0.14.3" description = "Bootstrap-based Sphinx theme from the PyData community" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2579,7 +2477,6 @@ test = ["pytest", "pytest-cov", "pytest-regressions"] name = "pygments" version = "2.17.1" description = "Pygments is a syntax highlighting package written in Python." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2595,7 +2492,6 @@ windows-terminal = ["colorama (>=0.4.6)"] name = "pynacl" version = "1.5.0" description = "Python binding to the Networking and Cryptography (NaCl) library" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -2622,7 +2518,6 @@ tests = ["hypothesis (>=3.27.0)", "pytest (>=3.2.1,!=3.3.0)"] name = "pyparsing" version = "3.1.1" description = "pyparsing module - Classes and methods to define and execute parsing grammars" -category = "main" optional = false python-versions = ">=3.6.8" files = [ @@ -2637,7 +2532,6 @@ diagrams = ["jinja2", "railroad-diagrams"] name = "pypath-common" version = "0.1.1" description = "Code shared across pypath modules" -category = "main" optional = false python-versions = ">=3.8,<4.0" files = [ @@ -2655,7 +2549,6 @@ timeloop = "*" name = "pyreadr" version = "0.5.0" description = "Reads/writes R RData and Rds files into/from pandas data frames." -category = "main" optional = false python-versions = "*" files = [ @@ -2694,7 +2587,6 @@ pandas = ">=1.2.0" name = "pysftp" version = "0.2.9" description = "A friendly face on SFTP" -category = "main" optional = false python-versions = "*" files = [ @@ -2708,7 +2600,6 @@ paramiko = ">=1.17" name = "python-dateutil" version = "2.8.2" description = "Extensions to the standard Python datetime module" -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" files = [ @@ -2723,7 +2614,6 @@ six = ">=1.5" name = "python-igraph" version = "0.11.3" description = "High performance graph data structures and algorithms (legacy package)" -category = "main" optional = true python-versions = ">=3.6" files = [ @@ -2744,7 +2634,6 @@ plotting = ["cairocffi (>=1.2.0)"] name = "python-json-logger" version = "2.0.7" description = "A python library adding a json log formatter" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2756,7 +2645,6 @@ files = [ name = "pytz" version = "2023.3.post1" description = "World timezone definitions, modern and historical" -category = "main" optional = false python-versions = "*" files = [ @@ -2768,7 +2656,6 @@ files = [ name = "pywin32" version = "306" description = "Python for Window Extensions" -category = "dev" optional = false python-versions = "*" files = [ @@ -2792,7 +2679,6 @@ files = [ name = "pywinpty" version = "2.0.12" description = "Pseudo terminal support for Windows from Python." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2808,7 +2694,6 @@ files = [ name = "pyyaml" version = "6.0.1" description = "YAML parser and emitter for Python" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -2868,7 +2753,6 @@ files = [ name = "pyzmq" version = "25.1.1" description = "Python bindings for 0MQ" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2974,7 +2858,6 @@ cffi = {version = "*", markers = "implementation_name == \"pypy\""} name = "rdata" version = "0.10.0" description = "Read R datasets from Python." -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -2995,7 +2878,6 @@ test = ["numpy (>=1.14)", "pytest", "pytest-cov"] name = "rdflib" version = "7.0.0" description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information." -category = "main" optional = true python-versions = ">=3.8.1,<4.0.0" files = [ @@ -3017,7 +2899,6 @@ networkx = ["networkx (>=2.0.0,<3.0.0)"] name = "rdkit" version = "2023.9.1" description = "A collection of chemoinformatics and machine-learning software written in C++ and Python" -category = "main" optional = true python-versions = "*" files = [ @@ -3056,7 +2937,6 @@ Pillow = "*" name = "referencing" version = "0.31.0" description = "JSON Referencing + Python" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -3072,7 +2952,6 @@ rpds-py = ">=0.7.0" name = "requests" version = "2.31.0" description = "Python HTTP for Humans." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3094,7 +2973,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] name = "rfc3339-validator" version = "0.1.4" description = "A pure python RFC3339 validator" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -3109,7 +2987,6 @@ six = "*" name = "rfc3986-validator" version = "0.1.1" description = "Pure python rfc3986 validator" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -3121,7 +2998,6 @@ files = [ name = "rpds-py" version = "0.13.1" description = "Python bindings to Rust's persistent data structures (rpds)" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -3230,7 +3106,6 @@ files = [ name = "scipy" version = "1.11.4" description = "Fundamental algorithms for scientific computing in Python" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -3273,7 +3148,6 @@ test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeo name = "send2trash" version = "1.8.2" description = "Send file to trash natively under Mac OS X, Windows and Linux" -category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" files = [ @@ -3290,7 +3164,6 @@ win32 = ["pywin32"] name = "setuptools" version = "69.0.1" description = "Easily download, build, install, upgrade, and uninstall Python packages" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -3307,7 +3180,6 @@ testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jar name = "six" version = "1.16.0" description = "Python 2 and 3 compatibility utilities" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -3319,7 +3191,6 @@ files = [ name = "sniffio" version = "1.3.0" description = "Sniff out which async library your code is running under" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3331,7 +3202,6 @@ files = [ name = "snowballstemmer" version = "2.2.0" description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." -category = "dev" optional = false python-versions = "*" files = [ @@ -3343,7 +3213,6 @@ files = [ name = "soupsieve" version = "2.5" description = "A modern CSS selector implementation for Beautiful Soup." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3355,7 +3224,6 @@ files = [ name = "sparqlwrapper" version = "2.0.0" description = "SPARQL Endpoint interface to Python" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -3376,7 +3244,6 @@ pandas = ["pandas (>=1.3.5)"] name = "sphinx" version = "7.2.6" description = "Python documentation generator" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -3412,7 +3279,6 @@ test = ["cython (>=3.0)", "filelock", "html5lib", "pytest (>=4.6)", "setuptools name = "sphinx-autodoc-typehints" version = "1.25.2" description = "Type hints (PEP 484) support for the Sphinx autodoc extension" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -3432,7 +3298,6 @@ testing = ["covdefaults (>=2.3)", "coverage (>=7.3)", "diff-cover (>=7.7)", "pyt name = "sphinx-copybutton" version = "0.5.2" description = "Add a copy button to each of your code cells." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3451,7 +3316,6 @@ rtd = ["ipython", "myst-nb", "sphinx", "sphinx-book-theme", "sphinx-examples"] name = "sphinx-last-updated-by-git" version = "0.3.6" description = "Get the \"last updated\" time for each Sphinx page from Git" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3466,7 +3330,6 @@ sphinx = ">=1.8" name = "sphinx-remove-toctrees" version = "0.0.3" description = "Reduce your documentation build size by selectively removing toctrees from pages." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -3486,7 +3349,6 @@ tests = ["ipython", "myst-parser", "pytest", "sphinx-book-theme"] name = "sphinxcontrib-applehelp" version = "1.0.7" description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -3505,7 +3367,6 @@ test = ["pytest"] name = "sphinxcontrib-devhelp" version = "1.0.5" description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -3524,7 +3385,6 @@ test = ["pytest"] name = "sphinxcontrib-fulltoc" version = "1.2.0" description = "Include a full table of contents in your Sphinx HTML sidebar" -category = "dev" optional = false python-versions = "*" files = [ @@ -3535,7 +3395,6 @@ files = [ name = "sphinxcontrib-htmlhelp" version = "2.0.4" description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -3554,7 +3413,6 @@ test = ["html5lib", "pytest"] name = "sphinxcontrib-jsmath" version = "1.0.1" description = "A sphinx extension which renders display math in HTML via JavaScript" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -3569,7 +3427,6 @@ test = ["flake8", "mypy", "pytest"] name = "sphinxcontrib-qthelp" version = "1.0.6" description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -3588,7 +3445,6 @@ test = ["pytest"] name = "sphinxcontrib-serializinghtml" version = "1.1.9" description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -3607,7 +3463,6 @@ test = ["pytest"] name = "sqlparse" version = "0.4.4" description = "A non-validating SQL parser." -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -3624,7 +3479,6 @@ test = ["pytest", "pytest-cov"] name = "stack-data" version = "0.6.3" description = "Extract data from python stack frames and tracebacks for informative displays" -category = "dev" optional = false python-versions = "*" files = [ @@ -3644,7 +3498,6 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"] name = "tabulate" version = "0.9.0" description = "Pretty-print tabular data" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3659,7 +3512,6 @@ widechars = ["wcwidth"] name = "terminado" version = "0.18.0" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -3681,7 +3533,6 @@ typing = ["mypy (>=1.6,<2.0)", "traitlets (>=5.11.1)"] name = "texttable" version = "1.7.0" description = "module to create simple ASCII tables" -category = "main" optional = true python-versions = "*" files = [ @@ -3693,7 +3544,6 @@ files = [ name = "timeloop" version = "1.0.2" description = "An elegant way to run period tasks." -category = "main" optional = false python-versions = "*" files = [ @@ -3705,7 +3555,6 @@ files = [ name = "tinycss2" version = "1.2.1" description = "A tiny CSS parser" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3724,7 +3573,6 @@ test = ["flake8", "isort", "pytest"] name = "toml" version = "0.10.2" description = "Python Library for Tom's Obvious, Minimal Language" -category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -3736,7 +3584,6 @@ files = [ name = "tomli" version = "2.0.1" description = "A lil' TOML parser" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3748,7 +3595,6 @@ files = [ name = "tornado" version = "6.3.3" description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." -category = "main" optional = false python-versions = ">= 3.8" files = [ @@ -3769,7 +3615,6 @@ files = [ name = "tqdm" version = "4.66.1" description = "Fast, Extensible Progress Meter" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3790,7 +3635,6 @@ telegram = ["requests"] name = "traitlets" version = "5.9.0" description = "Traitlets Python configuration system" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3806,7 +3650,6 @@ test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"] name = "types-python-dateutil" version = "2.8.19.14" description = "Typing stubs for python-dateutil" -category = "dev" optional = false python-versions = "*" files = [ @@ -3818,7 +3661,6 @@ files = [ name = "typing-extensions" version = "4.8.0" description = "Backported and Experimental Type Hints for Python 3.8+" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3830,7 +3672,6 @@ files = [ name = "tzdata" version = "2023.3" description = "Provider of IANA time zone data" -category = "main" optional = false python-versions = ">=2" files = [ @@ -3842,7 +3683,6 @@ files = [ name = "uri-template" version = "1.3.0" description = "RFC 6570 URI Template Processor" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3857,7 +3697,6 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake name = "urllib3" version = "2.1.0" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3874,7 +3713,6 @@ zstd = ["zstandard (>=0.18.0)"] name = "wcwidth" version = "0.2.11" description = "Measures the displayed width of unicode strings in a terminal" -category = "dev" optional = false python-versions = "*" files = [ @@ -3886,7 +3724,6 @@ files = [ name = "webcolors" version = "1.13" description = "A library for working with the color formats defined by HTML and CSS." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3902,7 +3739,6 @@ tests = ["pytest", "pytest-cov"] name = "webencodings" version = "0.5.1" description = "Character encoding aliases for legacy web content" -category = "dev" optional = false python-versions = "*" files = [ @@ -3914,7 +3750,6 @@ files = [ name = "websocket-client" version = "1.6.4" description = "WebSocket client for Python with low level API options" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -3931,7 +3766,6 @@ test = ["websockets"] name = "xarray" version = "2023.11.0" description = "N-D labeled arrays and datasets in Python" -category = "main" optional = false python-versions = ">=3.9" files = [ @@ -3955,7 +3789,6 @@ viz = ["matplotlib", "nc-time-axis", "seaborn"] name = "xlrd" version = "2.0.1" description = "Library for developers to extract data from Microsoft Excel (tm) .xls spreadsheet files" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ @@ -3972,7 +3805,6 @@ test = ["pytest", "pytest-cov"] name = "zipp" version = "3.17.0" description = "Backport of pathlib-compatible object wrapper for zip files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3992,4 +3824,4 @@ pathophenodb = ["sparqlwrapper"] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "2a2b23f862f6c03b4fd94aed3478db41ec41bd382bde0225d66dfa4a5f3351f7" +content-hash = "8c6904715b2f787ec8ee547a00d37254793045ddf248ca8a520aa95156110e40"