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1. panBART panBART Public

   A long-context encoder-decoder Package for Pangenomes

   Python 8

2. PopPUNK-mod PopPUNK-mod Public

   Simulates core and accessory genome divergence and calculates Hamming and Jaccard distances.

   R 4

3. ggCaller ggCaller Public

   Forked from bacpop/ggCaller

   Bifrost graph gene caller.

   C++ 3

4. ggCallaroo ggCallaroo Public

   A snakelike pipeline combining ggCaller and Panaroo.

   Python 2 1

5. ExpEvoAnalyzer ExpEvoAnalyzer Public

   A workflow to analyse experimental evolution data.

   Python 1

6. PansimNuc PansimNuc Public

   A nucleotide-level pangenome simulator.

   Rust 2