• C library for high-throughput sequencing data formats

    C 344 248 Updated Aug 14, 2018
  • Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 644 348 Updated Aug 14, 2018
  • This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

    C 166 108 Updated Aug 14, 2018
  • Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX 271 112 Updated Aug 14, 2018
  • Plugins for use with HTSlib

    C 2 1 Updated Aug 13, 2018
  • A Java API for high-throughput sequencing data (HTS) formats.

    Java 169 185 Updated Aug 10, 2018
  • Staging ground for the development of the next major version of HTSJDK

    6 BSD-3-Clause Updated Aug 10, 2018
  • The http://www.htslib.org/ web site

    HTML 3 13 Updated Aug 9, 2018
  • Maintenance scripts used with the htslib/samtools/bcftools repositories

    Shell 2 1 Updated Jul 18, 2018
  • Note: tabix and bgzip binaries are now part of the HTSlib project.

    C 58 35 Updated Sep 27, 2017
  • The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites

    CSS 1 1 Updated Jun 10, 2015
  • Sequence Alignment Programming Interface

    C 3 Updated Mar 8, 2012
  • Created Mar 8, 2012