• A Java API for high-throughput sequencing data (HTS) formats.

    Java 110 143 Updated Jan 21, 2017
  • This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

    C 108 72 Updated Jan 19, 2017
  • Maintenance scripts used with the htslib/samtools/bcftools repositories

    Updated Jan 18, 2017
  • C library for high-throughput sequencing data formats

    C 225 176 Updated Jan 17, 2017
  • Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 452 262 Updated Jan 17, 2017
  • Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX 171 62 Updated Dec 15, 2016
  • Note: tabix and bgzip binaries are now part of the HTSlib project.

    C 49 27 Updated Dec 10, 2016
  • Plugins for use with HTSlib

    C 2 Updated Oct 4, 2016
  • The http://www.htslib.org/ web site

    HTML 3 5 Updated Sep 13, 2016
  • The http://samtools.github.io/ (master) and legacy http://samtools.sourceforge.net/ (sf-pages) web sites

    CSS 1 Updated Jun 10, 2015
  • Sequence Alignment Programming Interface

    C 3 Updated Mar 8, 2012
  • Created Mar 9, 2012