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How to Generate Haplotype 1 and 2 FASTA Files Using Phased VCF from HiPhase
#2310
opened Oct 24, 2024 by
ClarenceHsiang
Error "Failed to read from standard input: unknown file type" with Gzipped BAM Files
#2293
opened Sep 27, 2024 by
Silvia-lme
Document / Improve / Polish / Fix --indels-2.0
bug
D1: Difficult
enhancement
P2: Desirable
#2280
opened Sep 17, 2024 by
jkbonfield
Significant difference between IDV and AD when calling certain RNA-seq indels with mpileup
#2277
opened Sep 12, 2024 by
luyh-xp
Variable expansion issue with +setGT? [$VARIABLE-] isn't working...
#2276
opened Sep 9, 2024 by
goeckeritz
Remove the
*
ALT Allele Reporting From a g.vcf Before (or After) Genotyping
#2258
opened Aug 14, 2024 by
jon4thin
bcftools mpileup resulting in downstream unparsable vcf record with allele M
needs-feedback
#2256
opened Aug 13, 2024 by
anscholes
bcftools concat retry mechanisms?
htslib-dependent
Cannot be fixed until htslib is fixed
#2245
opened Aug 6, 2024 by
graphenn
[mpileup2] How does mpileup choose the reads for later calling, and is the -d flag behaving strangely?
D1: Difficult
enhancement
htslib-dependent
Cannot be fixed until htslib is fixed
#2234
opened Jul 25, 2024 by
goeckeritz
Merge adjacent sites into a complex
D1: Difficult
P2: Desirable
#2229
opened Jul 19, 2024 by
xfk274280
bcftools norm shifts symbolic <DEL> to position 1 without warning if the END tag is missing from VCF
#2216
opened Jul 1, 2024 by
davmlaw
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