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Set default logging level to INFO instead of DEBUG #739

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vdauwera opened this Issue Nov 8, 2016 · 1 comment

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@ronlevine ronlevine

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vdauwera commented Nov 8, 2016

We're getting DEBUG messages bleeding through to GATK output, for example this is showing up during normal runs (not setting log level to debug):

DEBUG	2016-11-04 15:31:23	BlockCompressedOutputStream	Using deflater: Deflater

coming from https://github.com/samtools/htsjdk/blob/master/src/main/java/htsjdk/samtools/util/BlockCompressedOutputStream.java#L166

        log.debug("Using deflater: " + deflater.getClass().getSimpleName());

It would be better to have the default level be INFO. Clients can set a different level if required.

ronlevine was assigned by vdauwera Nov 8, 2016

ronlevine added the secon label Nov 8, 2016

ronlevine referenced this issue Nov 8, 2016

Merged

Change default logging level to INFO #740

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ronlevine commented Nov 15, 2016

Closing since #740 is merged.

ronlevine closed this Nov 15, 2016

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