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Maintain ordering of header returned by VCFUtils.smartMergeHeaders() #847
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ronlevine
self-assigned this
Apr 7, 2017
ronlevine
changed the title from
Maintain ordering of header returned from VCFUtils.smartMergeHeaders() to Maintain ordering of header returned by VCFUtils.smartMergeHeaders()
Apr 7, 2017
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Closed since #848 is merged. |
ronlevine
closed this
Apr 8, 2017
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ronlevine commentedApr 7, 2017
Subject of the issue
The order of the VCF header lines returned from VCFUtils.smartMergeHeaders() was incorrectly lexicographically sorted. The order should be maintained. The issue was found when researching the cause of broadinstitute/picard#669.
Your environment
Steps to reproduce
Refer to @sooheelee 's example in broadinstitute/picard#669.
Expected behaviour
No error when running
ValidateVariantsafterSortVcf.Actual behaviour
Get an error similar to: