@@ -0,0 +1,152 @@
+// DateParser.java
+// $Id: DateParser.java,v 1.3 2001/01/04 13:26:19 bmahe Exp $
+// (c) COPYRIGHT MIT, INRIA and Keio, 2000.
+
+/*
+W3C IPR SOFTWARE NOTICE
+
+Copyright 1995-1998 World Wide Web Consortium, (Massachusetts Institute of
+Technology, Institut National de Recherche en Informatique et en
+Automatique, Keio University). All Rights Reserved.
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+Permission to use, copy, and modify this software and its documentation,
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+hereby granted, provided that you include the following on ALL copies of the
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+
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+CONSEQUENTIAL DAMAGES ARISING OUT OF ANY USE OF THE SOFTWARE OR
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+or publicity pertaining to the software without specific, written prior
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+This formulation of W3C's notice and license became active on August 14
+1998. See the older formulation for the policy prior to this date. Please
+see our Copyright FAQ for common questions about using materials from our
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+(last updated 14-Aug-1998)
+
+ */
+
+package htsjdk.samtools.util ;
+
+import org.testng.Assert ;
+import org.testng.annotations.DataProvider ;
+import org.testng.annotations.Test ;
+
+import java.text.DateFormat ;
+import java.util.Date ;
+
+/* *
+ * NOTE: This code has been taken from w3.org, and modified slightly to handle timezones of the form [-+]DDDD,
+ * and also to fix a bug in the application of time zone to the parsed date.
+ *
+ * Date parser for ISO 8601 format
+ * http://www.w3.org/TR/1998/NOTE-datetime-19980827
+ * @version $Revision: 1.3 $
+ * @author bmahe@w3.org
+ */
+
+public class DateParserTest {
+
+ private static void test (final String isodate ) {
+ Date date = DateParser . parse(isodate);
+ final String isodateRoundTrip = DateParser . getIsoDate(date);
+
+ final Date orig = DateParser . parse(isodate);
+ final Date roundTrip = DateParser . parse(isodateRoundTrip);
+
+ assertDatesAreClose(orig, roundTrip);
+ }
+
+ private static void test (final Date date ) {
+ String isodate;
+ isodate = DateParser . getIsoDate(date);
+ final Date dateRoundTrip = DateParser . parse(isodate);
+
+ assertDatesAreClose(date, dateRoundTrip);
+ Assert . assertTrue(Math . abs(Date . parse(date. toString()) - Date . parse(dateRoundTrip. toString())) < 10 );
+
+ }
+
+ @DataProvider (name = " dateDate"
+ public Object [][] dateData () {
+ return new Object [][]{
+ {" 1997-07-16T19:20:30.45-02:00"
+ {" 1997-07-16T19:20:30+01:00"
+ {" 1997-07-16T19:20:30+01:00"
+ {" 1997-07-16T19:20"
+ {" 1997-07-16"
+ {" 1997-07"
+ {" 1997"
+ };
+ }
+
+ @Test (dataProvider = " dateDate"
+ public static void testString (final String string ) {
+ test(string);
+ }
+
+ @Test (dataProvider = " dateDate"
+ public static void testDates (final String string ) {
+ test(DateParser . parse(string));
+ }
+
+ @Test
+ public static void testDate () {
+ test(new Date ());
+ }
+
+ public static void assertDatesAreClose (final Date lhs , final Date rhs ) {
+ Assert . assertEquals(lhs. getYear(), rhs. getYear());
+ Assert . assertEquals(lhs. getMonth(), rhs. getMonth());
+ Assert . assertEquals(lhs. getDate(), rhs. getDate());
+ Assert . assertEquals(lhs. getDay(), rhs. getDay());
+ Assert . assertEquals(lhs. getHours(), rhs. getHours());
+ Assert . assertEquals(lhs. getMinutes(), rhs. getMinutes());
+ Assert . assertEquals(lhs. getSeconds(), rhs. getSeconds());
+ Assert . assertEquals(lhs. getTimezoneOffset(), rhs. getTimezoneOffset());
+ }
+}
Good catch. I'm surprised we haven't noticed this bug when using
OverlapDetector...