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Commits on Nov 15, 2012
  1. qgis: Add check for PyQt importability

    If PyQt can't be imported, the build will fail and the user likely needs to
    adjust their `PYTHONPATH`. Ensure the formula provides a clear error message in
    these cases.
    Fixes Homebrew/homebrew-science#27.
    Sharpie committed Nov 15, 2012
Commits on Nov 11, 2012
  1. nco: Update to 4.2.2

    The location of malloc on OS X has been sorted out upstream.
    Sharpie committed Nov 11, 2012
Commits on Nov 9, 2012
  1. blat: A better test

    committed Nov 9, 2012
  2. BLAT 35: New recipe

    sjackman committed with Nov 3, 2012
  3. bowtie2 2.0.2: New formula

    sjackman committed with Nov 5, 2012
Commits on Oct 15, 2012
  1. openblas: 0.2.4 and HEAD and with LAPACK.

    - Version bump! Huge one.
    - Enable built of (patched) LAPACK to get both: BLAS/LAPACK
    - LAPACK is downloaded by us, cached and checksum-ed.
    - Adding HEAD
    - Passing FC to make, so it is possible to use a
      custom gfortran (e.g. the gfortran-4.7 from
      the homebrew-dupes/gcc.rb formula).
    - Work around a (probably) superenv bug for brew's default
      gfortran. (switching to env :std)
    Signed-off-by: Samuel John <>
    committed with Aug 24, 2012
Commits on Sep 25, 2012
  1. ViennaRNA Package 2.0.7

    The Vienna RNA Package consists of a C code library and several
    stand-alone programs for the prediction and comparison of RNA secondary
    Closes #16.
    Signed-off-by: Max Howell <>
    Hiroyuki Nakamura committed with mxcl Aug 31, 2012
  2. Add WCSlib

    A library for handling World Coordinate System transformations in astronomy.
    WCSlib is the authoritative library for doing these transformations
    (eg: if a star is at this position in the sky and my telescope is
    pointed like so, at which pixel coordinate will the star appear?), and
    is pretty widely used in astronomical code.
    Signed-off-by: Max Howell <>
    Closes #17.
    dstndstn committed with mxcl Sep 17, 2012
Commits on Sep 7, 2012
  1. Import Formula: spatialite-gis

    A minimalistic Geographic Information System built on top of SpatiaLite and
    Sharpie committed Sep 7, 2012
  2. Use SHA1 for formula checksums

    Convert all checksums to SHA1 as MD5 is broken enough that a tarball that
    passes the checksum cam be fabricated in a manner of hours.
    Sharpie committed Sep 7, 2012
  3. spatialite-gis: Update patches

    String equality fix is now upstream, so source the patch from there.
    Sharpie committed Sep 5, 2012
  4. spatialite-gui, spatialite-gis: Depend on wxmac

    Now that wxMac is tracking the 2.9.x branch and supports 64-bit builds by
    default, we can depend on it and pull the warnings about unstability.
    Also, switch to SHA1 sums.
    Sharpie committed Sep 5, 2012
  5. New Formula: SpatiaLite-GIS

    A minimalistic Geographic Information System built on top of SpatiaLite and
    Sharpie committed Jun 19, 2011
Commits on Jun 22, 2012
  1. QGIS: Update to 1.8.0

    Now compiles with Clang!
    Sharpie committed Jun 22, 2012
  2. QGIS: Update internal bison to 2.5

    Closes #11.
    Signed-off-by: Charlie Sharpsteen <>
    Lifepillar committed with Sharpie Jun 6, 2012
  3. QGIS: Add caveat about brew linkapps

    Signed-off-by: Charlie Sharpsteen <>
    Lifepillar committed with Sharpie Jun 6, 2012
Commits on Jun 1, 2012
  1. QGIS: Fix HEAD build

      - Disable the building of QGIS test programs as these fail due to incorrectly
        set loader paths.
      - Fix code for locating GRASS when --HEAD is specified.
      - Back QGIS packaging level down as the default is now a bit over the top for
        software installed by a package manager.
      - Install QGIS development Frameworks.
    Sharpie committed Jun 1, 2012
Commits on May 24, 2012
  1. QGIS: Use std_cmake_args

    Instead of the old, depreciated std_cmake_parameters. Also, add lots of quotes
    to guard against paths with spaces.
    Sharpie committed May 24, 2012
Commits on May 2, 2012
  1. QGIS: Remove `--devel` build

    The release-1_8 branch is no longer available.
    Sharpie committed May 2, 2012
Commits on Apr 26, 2012
  1. New Formula: OpenBLAS

    An optimized, open-source library implementing the BLAS subrountines.
    Closes #5.
    Signed-off-by: Charlie Sharpsteen <>
    staticfloat committed with Sharpie Apr 26, 2012
Commits on Apr 25, 2012
  1. New Formula: NCO

    The NetCDF Operatorxs (NCO) is a set of tools for manipulating data stored in
    NetCDF files.
    Sharpie committed Apr 25, 2012
Commits on Apr 24, 2012
  1. New Formula: xmgredit

    xmgredit is a Motif-based mesh editor that can be used to modify the
    computation grids of models such as ADCIRC.
    Sharpie committed Mar 20, 2011
  2. New Formula: HOPDM

    The Higher Order Primal Dual Method (HOPDM) solver optimizes linear programming
    problems using an interior point method.
    Sharpie committed Mar 13, 2011
  3. Import Formula: QGIS

    Formula imported from Sharpie/homebrew-science.
    Sharpie committed Apr 23, 2012
Commits on Apr 23, 2012
  1. QGIS: Fails with clang

    Sharpie committed Apr 23, 2012
  2. QGIS: Fix MD5

    Sharpie committed Mar 12, 2012
Commits on Apr 22, 2012
  1. 'science'

    Kick off the scientific formulae repository.
    Sharpie committed Apr 22, 2012
Commits on Feb 19, 2012
  1. QGIS: Improve wrapper script

    The wrapper script now properly sets the PYTHONPATH before launching
    just in case the user is not using Homebrew's Python.
    Sharpie committed Feb 19, 2012
  2. QGIS: Update to 1.7.4

    Moved to the 1.7.4 stable release now that Qt issues are sorted out. 1.8.0 has
    been retained as a `--devel` option.
    Sharpie committed Feb 19, 2012
Commits on Jan 13, 2012
  1. QGIS: Update to 1.8-dev

    The 1.7.x release no longer builds against Qt 4.8.0. Now targetting 1.8
    development branch. This one requires a newer version of bison. Sticking with
    an internal QWT build as QGIS fails to link properly against the frameworks
    built by version 6.x.
    Sharpie committed Jan 12, 2012
Commits on Oct 6, 2011
  1. QGIS: Update to 1.7.1

    A few additional formula tweaks:
      - Tweaked discovery of gettext while building GRASS plugins so that
        `libintl.h` can be found.
      - Now build internal QWT 5.2.2 as a disposable static library. This removes
        one more linking headache.
    Sharpie committed Oct 6, 2011