NF-Pro(v)Viz

A small tool to parse experimental BioObject Component output from Nextflow, worked on in this PR, into an HTML report with a plotted DAG (via GraphViz)

Requirements

• Python 3.6+ (Needs to support f-strings)
• The GraphViz dot command, for generating the graph.

Installation

git clone https://github.com/samuell/nfproviz.git
cd nfproviz

Usage

python nfproviz.py -i bco.json -o bco.html

For shortened step/file paths:

python nfproviz.py -s -i bco.json -o bco.html

For even more shortened step/file paths:

python nfproviz.py -ss -i bco.json -o bco.html

For horizontal graph:

python nfproviz.py -hg -i bco.json -o bco.html