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Pathogen Genomics, Wellcome Trust Sanger Institute

Pathogen Genomics, Wellcome Trust Sanger Institute

Perl 0 3

Bio-AutomatedAnnotation

Perl module to take in an genomic assembly and produce annoation

Updated April 17, 2014

Python 2 1

Assembly_tools

Scripts relating to genome assemblies

Updated April 16, 2014

Perl 0 2

PathFind

Modularised versions of *find scripts

Updated April 16, 2014

deployment

Updated April 15, 2014

Perl 0 1

Bio-RNASeq

The new Sanger Pathogen Informatics RNA Seq analysis pipeline

Updated April 10, 2014

Artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Updated April 10, 2014

Python 1 3

Fastaq

Python3 scripts to manipulate FASTA and FASTQ files

Updated April 09, 2014

assembly-stats

Get assembly statistics from FASTA and FASTQ files

Updated April 09, 2014

Java 8 4

GeneDB

Web front-end for genomic data, developed at the Pathogen Genomics group, Wellcome Trust Sanger Institute

Updated March 26, 2014

Python 0 1

Farm_blast

Python3 module to run blast+ or blastall in parallel on an LSF compute farm

Updated March 10, 2014

vr-codebase

forked from VertebrateResequencing/vr-codebase

The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute

Updated March 06, 2014

Perl 0 5

Bio-Tradis

Updated March 06, 2014

vr-pipe

forked from VertebrateResequencing/vr-pipe

Generic pipeline system

Updated February 21, 2014

JavaScript 11 7

Web-Artemis

Updated February 20, 2014

gubbins

Updated February 17, 2014

Perl 0 6

Bio-VertRes-Config

Updated February 17, 2014

Python 1 1

resistome-db

Updated February 12, 2014

Perl 4 4

Bio-PanGenome

Updated February 11, 2014

Perl 7 8

update_pipeline

Updated February 07, 2014

Java 7 5

crawl2

A spiritual successor to Crawl

Updated February 07, 2014

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