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# CHADO (SO) database key mappings (used for writing out to file)
#
# CHADO map to qualifier (optional)
pseudogenic_transcript mRNA pseudogene=unknown
pseudogenic_exon CDS pseudogene=unknown
pseudogene gene pseudogene=unknown
polypeptide_motif CDS_motif
five_prime_UTR 5'UTR
three_prime_UTR 3'UTR
polypeptide_domain CDS_domain
region misc_feature
remark misc_feature
sequence_difference misc_feature
SECIS_element misc_feature note=SECIS_element
contig source
PCR_product misc_feature note=PCR_product
dinucleotide_repeat_microsatellite_feature misc_feature note=dinucleotide_repeat_microsatellite_feature
EST_match misc_feature note=EST_match
match_part misc_feature note=match_part
direct_repeat repeat_region rpt_type=direct
polypeptide_domain misc_feature
centromere misc_feature note=centromere
modified_amino_acid_feature misc_feature note=modified_amino_acid_feature
snRNA ncRNA ncRNA_class=snRNA
snoRNA ncRNA ncRNA_class=snoRNA
nucleotide_match misc_feature note=nucleotide_match
uORF misc_feature note=uORF
sORF misc_feature note=sORF
tnaORF misc_feature note=tnaORF