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cram support

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commit 44a930fc301597480cb62c649b21ef3e45ec1ca9 1 parent 71caa68
tcarver authored
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2  uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java
@@ -74,7 +74,7 @@ public ReferenceSequence getSubsequenceAt(String contig, long start, long stop )
{
try
{
- //if(bamView.isConcatSequences())
+ if(bamView.isConcatSequences())
{
int offset = bamView.getSequenceOffset(contig);
start += offset;
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