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Commits on Jan 27, 2017
  1. Merge pull request #230 from vaofford/artemis_v16.0.18

    vaofford committed Jan 27, 2017
    update scratch108 to scratch118 - v16.0.18
Commits on Nov 23, 2016
  1. update urls

    andrewjpage committed Nov 23, 2016
  2. inc artemis version

    andrewjpage committed Nov 23, 2016
  3. Update AUTHORS

    andrewjpage committed Nov 23, 2016
  4. Merge pull request #226 from aslett1/master

    andrewjpage committed Nov 23, 2016
    Updated NCBI blast URL to https
Commits on Nov 22, 2016
Commits on Sep 12, 2016
  1. Merge pull request #225 from satta/master

    satta committed Sep 12, 2016
    version bump
  2. bump copyright year

    satta committed Sep 12, 2016
  3. version bump

    satta committed Sep 12, 2016
Commits on Apr 20, 2016
  1. Merge pull request #221 from satta/tcdb_new

    andrewjpage committed Apr 20, 2016
    add TCDB as database
Commits on Jan 28, 2016
  1. add TCDB as database

    satta committed Jan 28, 2016
Commits on Nov 9, 2015
  1. Merge pull request #220 from satta/java8-sort

    jgtate committed Nov 9, 2015
    fix method name clash for List.sort() in Java 8
Commits on Nov 7, 2015
Commits on Oct 27, 2015
  1. Merge pull request #218 from afif-elghraoui/master

    satta committed Oct 27, 2015
    override abstract method close() in CRAMReferenceSequenceFile
Commits on Oct 26, 2015
  1. Merge pull request #219 from satta/fix_travis

    bewt85 committed Oct 26, 2015
    switch to older EMBOSS version
Commits on Oct 24, 2015
  1. switch to older EMBOSS version

    satta committed Oct 24, 2015
Commits on Oct 23, 2015
  1. override abstract method close() in CRAMReferenceSequenceFile

    0xaf1f committed Oct 23, 2015
    Building from source without this patch resulted in the following error:
    artemis-16.0.0+dfsg/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java:35:
    error: CRAMReferenceSequenceFile is not abstract and does not override abstract method close() in ReferenceSequenceFile
Commits on Aug 26, 2015
  1. Merge pull request #212 from satta/alias

    aslett1 committed Aug 26, 2015
    add new 'alias' qualifier
Commits on Aug 14, 2015
  1. Merge pull request #217 from aslett1/master

    bewt85 committed Aug 14, 2015
    Added Kim Rutherford
  2. Added Kim Rutherford

    aslett1 committed Aug 14, 2015
Commits on Jun 11, 2015
  1. Merge pull request #215 from sanger-pathogens/BT5_travis

    satta committed Jun 11, 2015
    Add TravisCI Support, change README to markdown
  2. Build using Ant under openjdk7

    bewt85 committed Jun 11, 2015
    Rather than testing the Ant build under multiple JDKs, I've arbitrarily
    decided to test it only under openjdk7.  This keeps us to 4 builds
    rather than 6 before the build is reported as green which should be a
    bit quicker.
  3. Move dependencies to ${HOME}/dependencies

    bewt85 committed Jun 11, 2015
    ant builds copy everything in the pwd into ant_build and then try to
    build all of the java files copied, including those of the dependencies
    which are built separately.  This does not end well.
  4. It seemed unlikely that we support Java 8

    bewt85 committed Jun 11, 2015
    We don't
  5. Add some more javas to test against

    bewt85 committed Jun 11, 2015
  6. Give longer to upload the cache

    bewt85 committed Jun 11, 2015
  7. Reformat README to markdown

    bewt85 committed Jun 11, 2015
  8. Add build status to README

    bewt85 committed Jun 11, 2015
  9. Add Emboss to TravisCI

    bewt85 committed Jun 11, 2015
Commits on Jun 10, 2015
  1. Fix X11 issues with tests

    bewt85 committed Jun 10, 2015