Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Java HTML JavaScript Shell CSS Makefile
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
META-INF J2 version Jun 9, 2004
artemis_sqlmap add plasmid to list of srcfeatures Apr 26, 2010
docs Changed EBI DbFetch code so that the function works again. Added late… Jan 25, 2018
etc Small change to handling of bam/cram loading exceptions and upped pro… Mar 6, 2018
images Added new splash screen image Mar 2, 2018
lib Changed EBI DbFetch code so that the function works again. Added late… Jan 25, 2018
org/gmod/schema org.gmod.schema Aug 13, 2009
test Changed BamUtilsTest class to cope with connect exception. Feb 12, 2018
uk/ac/sanger/artemis small increase in splash height for ubuntu Mar 9, 2018
.classpath Changed EBI DbFetch code so that the function works again. Added late… Jan 25, 2018
.gitignore Addition of CRAM file handling. Update of various jars. Addition of m… Jan 8, 2018
.project eclipse project Nov 11, 2005
.travis.yml travis yml change Jan 29, 2018
AUTHORS Changed EBI DbFetch code so that the function works again. Added late… Jan 25, 2018
ChangeLog Small change to handling of bam/cram loading exceptions and upped pro… Mar 6, 2018
INSTALL Changed EBI DbFetch code so that the function works again. Added late… Jan 25, 2018
LICENSE Changed EBI DbFetch code so that the function works again. Added late… Jan 25, 2018
Makefile Rebranded splash screen Feb 13, 2018
README.md badges on separate rows Mar 29, 2018
act Added new environment variable check for sanger Feb 9, 2018
art Added new environment variable check for sanger Feb 9, 2018
art.bat Changed EBI DbFetch code so that the function works again. Added late… Jan 25, 2018
bamview Minor script changes. Property name change Feb 2, 2018
build.xml Addition of CRAM file handling. Update of various jars. Addition of m… Jan 8, 2018
dnaplotter Minor script changes. Property name change Feb 2, 2018
install_dependencies.sh First commit of unit test changes. Added more manual unit tests, an E… Oct 2, 2017
setenv Changed EBI DbFetch code so that the function works again. Added late… Jan 25, 2018

README.md

The Artemis Software

The Artemis Software is a set of software tools for genome browsing and annotation.

Build Status
License: GPL v3
status
status
status
status
status
status
status
status

Contents

Introduction

The Artemis Software includes:

  • Artemis
  • ACT
  • BamView
  • DNAPlotter

Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation. Artemis is written in Java, and is available for UNIX, Macintosh and Windows systems. It can read EMBL and GENBANK database entries or sequence in FASTA, indexed FASTA or raw format. Other sequence features can be in EMBL, GENBANK or GFF format.

ACT is a free tool for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between genomes and to explore conservation of synteny, in the context of the entire sequences and their annotation.

For further information, please see the Artemis GitHub page

Installation

For instructions on how to install Artemis, please see the Artemis manual.

Usage

For instructions please see the Artemis manual

License

Artemis is free software, licensed under GPLv3.

For more information on how to download Artemis, please see the Artemis GitHub page

Documentation

The Artemis user manual is at: http://www.sanger.ac.uk/science/tools/artemis

The ACT user manual is at: http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act

The DNA plotter user manual is at: http://www.sanger.ac.uk/science/tools/dnaplotter

The BAM View user manual is at: http://www.sanger.ac.uk/science/tools/bamview