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Perl Perl6 Other
Branch: master

Merge pull request #52 from aslett1/master

Changed Carla email address to path-help
latest commit 17f455aeba
@jgtate jgtate authored
Failed to load latest commit information.
bin typo fixed
lib/Bio Merge pull request #51 from nds/add_iva_qc_wrapper
t delete ref bam bai file too
.gitignore Reduce size of delimiter in union fast for abacas
.travis.yml Travis already has a JRE and doesn't need one added
AUTHORS Add build status to README
dist.ini Fix binary file encoding so dzil test works
forward_test.fastq Files to test iva_qc
reverse_test.fastq Files to test iva_qc
software_license rename license file to avoid conflicts with dzil

Assembly Improvement

Take in an assembly in FASTA format, reads in FASTQ format, and optionally a reference and produce a better reference using Abacas/SSpace and GapFiller.

Build Status

Scaffolding is performed using SSpace, and gap closing is performed using GapFiller. Both must be downloaded from [Optional] Contig Ordering is performed using Abacas, and requires nucmer and promer to be installed.

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