@andrewjpage andrewjpage released this Jan 25, 2018 · 11 commits to master since this release

Assets 2
Merge pull request #79 from andrewjpage/prog_versions

Prog versions

@martinghunt martinghunt released this Jan 12, 2017 · 19 commits to master since this release

Assets 2

bug fix: iva_qc crashes on a reference genome with no CDS. Fix added to stop iva_qc_make_db from including anthing without at least one CDS.

@martinghunt martinghunt released this Sep 6, 2016 · 26 commits to master since this release

Assets 2

Require Pysam version to be at least 0.8.1 (previously also had to be <=0.8.3 because of pyasm build issues).

@martinghunt martinghunt released this May 12, 2016 · 29 commits to master since this release

Assets 2

Two little changes, which won't affect results.

  1. Highlight the --reference option as experimental.
  2. added Travis CI.

@martinghunt martinghunt released this May 5, 2016 · 40 commits to master since this release

Assets 2

Add support for new samtools sort syntax introduced in 1.2. Keep support for old samtools versions as well.

@martinghunt martinghunt released this Apr 18, 2016 · 51 commits to master since this release

Assets 2
  • force to use pysam 0.8.1-0.8.3. The new 0.9.0 will not install.

@martinghunt martinghunt released this Jan 25, 2016 · 54 commits to master since this release

Assets 2

Now runs kmc in multi-threaded mode by default. To force kmc to use one thread, use the new option --kmc_onethread.

@martinghunt martinghunt released this Oct 28, 2015 · 57 commits to master since this release

Assets 2
  • add --test option to run on test data
  • enforce samtools version at least 0.1.19