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branch: master

May 28, 2014

  1. Carla Cummins

    Merge pull request #42 from carlacummins/master

    Fixed error when using -a option
  2. Carla Cummins

    Fixed error when using -a option

May 22, 2014

  1. Jyothish

    Merge pull request #41 from jyothishnt/master

    Tests modified and passed successfully for -md5 option
    jyothishnt authored
  2. Tests modified and passed successfully for the changes made for -md5 …

    …option
    Jyothish Narayanan Nair Thulasee Bhai authored

May 21, 2014

  1. Jyothish

    Merge pull request #40 from jyothishnt/master

    New -md5 option
    jyothishnt authored
  2. Help modified and uncommented lib include - Jyothish

    Jyothish Narayanan Nair Thulasee Bhai authored
  3. New option -md5. Calculate the MD5 checksum for a given allele and an…

    …ywhere this allele is named or marked U (in the file or the spreadsheet) replace this identifier with the MD5 value. If the sequence is just 'N's then mark it as 'N' (not U) - By Jyothish
    Jyothish Narayanan Nair Thulasee Bhai authored

May 15, 2014

  1. Carla Cummins

    Merge pull request #39 from carlacummins/master

    Improved error handling for unknown species
  2. Carla Cummins

    Improved error handling for unknown species

  3. Carla Cummins

    Improved error handling for unknown species

  4. Carla Cummins

    Testing error catching

Dec 16, 2013

  1. andrewjpage

    Merge pull request #38 from andrewjpage/skip_corrupt_database

    Skip corrupt database
    andrewjpage authored
  2. andrewjpage

    tests for database species filtering

    andrewjpage authored
  3. andrewjpage

    all tests pass

    andrewjpage authored

Nov 19, 2013

  1. Carla Cummins

    Merge pull request #37 from carlacummins/master

    Updated sequence type choosing
    carlacummins authored
  2. Carla Cummins

    Updated sequence type choosing

    carlacummins authored

Nov 18, 2013

  1. Carla Cummins

    Merge pull request #36 from carlacummins/master

    Edits to sequence type choosing
    carlacummins authored
  2. Carla Cummins

    Edits to sequence type choosing

    carlacummins authored

Aug 19, 2013

  1. andrewjpage

    Merge pull request #35 from andrewjpage/master

    output concat sequence where all are unknown
    andrewjpage authored
  2. andrewjpage

    output concat sequence where all are unknown

    andrewjpage authored
  3. andrewjpage

    use version 28 of blast+

    andrewjpage authored

Jul 24, 2013

  1. CraigPorter

    Merge pull request #34 from CraigPorter/rename_license

    renamed LICENSE
    CraigPorter authored
  2. CraigPorter

    renamed LICENSE

    CraigPorter authored

Jun 26, 2013

  1. andrewjpage

    Merge pull request #33 from andrewjpage/master

    GPL
    andrewjpage authored
  2. andrewjpage

    GPL

    andrewjpage authored

Mar 08, 2013

  1. andrewjpage

    Merge pull request #32 from andrewjpage/master

    filter out main allele
    andrewjpage authored
  2. andrewjpage

    filter out the comparison allele name

    andrewjpage authored
  3. andrewjpage

    Merge pull request #31 from andrewjpage/master

    use new st
    andrewjpage authored
  4. andrewjpage

    replace method with new STs

    andrewjpage authored
  5. andrewjpage

    Merge pull request #30 from andrewjpage/master

    use st instead of gene id
    andrewjpage authored
  6. andrewjpage

    output the sequence type instead of gene id

    andrewjpage authored

Mar 07, 2013

  1. andrewjpage

    Merge pull request #29 from andrewjpage/master

    When theres contamination allow for the alternative matches to be displayed in the results
    andrewjpage authored
  2. andrewjpage

    missing commas in scripts

    andrewjpage authored
  3. andrewjpage

    output alternative values instead of contamination

    andrewjpage authored

Jan 16, 2013

  1. andrewjpage

    Merge pull request #28 from andrewjpage/emmST

    make scripts executable
    andrewjpage authored
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