From 7e9ca920118e38455dc4a4ab2d403cea80af7780 Mon Sep 17 00:00:00 2001 From: DLBPointon Date: Fri, 19 Sep 2025 13:57:38 +0100 Subject: [PATCH] Comment out some lines which may be causing a channel race condition --- subworkflows/local/input_check.nf | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/subworkflows/local/input_check.nf b/subworkflows/local/input_check.nf index 32507e01..3bdae4ae 100644 --- a/subworkflows/local/input_check.nf +++ b/subworkflows/local/input_check.nf @@ -162,12 +162,12 @@ workflow INPUT_CHECK { } // Remove any invalid lineages from precomputed_busco - ch_busco_lineages_list = ch_busco_lineages.flatten() - ch_parsed_busco_filtered = ch_parsed_busco - .filter { meta, path -> - ch_busco_lineages.contains(meta.lineage) - } - ch_parsed_busco_filtered = ch_parsed_busco_filtered.ifEmpty { Channel.value([]) } + // ch_busco_lineages_list = ch_busco_lineages.flatten() + // ch_parsed_busco_filtered = ch_parsed_busco + // .filter { meta, path -> + // ch_busco_lineages.contains(meta.lineage) + // } + // ch_parsed_busco_filtered = ch_parsed_busco_filtered.ifEmpty { Channel.value([]) } // // Get the BUSCO path if set