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facile-tools

Analysis tools for Functional Adaptive-optics Calcium Imaging in the Living Eye (FACILE). Developed by Sara Patterson in the Williams lab at the University of Rochester.

Dependencies

Tested on MATLAB 2018b and 2020a. Some of the newer UIs require 2022a. Some functions require the Signal Processing Toolbox, Image Processing Toolbox or Computer Vision Toolbox.

Included 3rd party toolboxes

Other misc 3rd party functions are found in \lib

Optional dependencies, not included

  • The cone isolation code requires Psychtoolbox and the Silent Substitution Toolbox
  • Generating a few of the spatial stimuli requires Stage-VSS

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Tools for segmentation and analysis of GCaMP6-expressing RGCs imaged in vivo with adaptive optics

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