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64 Open 3,370 Closed
64 Open 3,370 Closed
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How to transform csv files to be used with Azimuth
#3606 opened Oct 14, 2020 by algebio
Question about CLR normalization of ADT data in WNN - Seurat v4
#3605 opened Oct 14, 2020 by rstaupe
Integrating sc and sn data
#3603 opened Oct 14, 2020 by jad362
1
Workflow for Reciprocal PCA integration with SCTransform normalization
#3601 opened Oct 14, 2020 by zrcjessica
2
Reads per spot Visium
#3600 opened Oct 13, 2020 by tmccra2
SCTransform - return.only.var.genes option
#3598 opened Oct 13, 2020 by MartaBenegas
Create spatial Seurat object without SpaceRanger output
#3595 opened Oct 12, 2020 by ph329
R studio server crash running FindClusters using Leiden algorithm bug
#3594 opened Oct 12, 2020 by msalaciak
Why split the combined object into a list for analysis
#3592 opened Oct 11, 2020 by bassanio
duplicate 'row.names' are not allowed error in FindIntegrationAnchors bug
#3591 opened Oct 10, 2020 by rahulnutron
Cannot run PCA on integrated data
#3589 opened Oct 10, 2020 by jgamache014
Differential expression between conditions - FindMarkers more-information-needed
#3583 opened Oct 8, 2020 by Kikibarmpa
1
ProjectDim or ProjectCellEmbeddings for query/reference projection
#3581 opened Oct 8, 2020 by bdj34
SCtransform more-information-needed
#3578 opened Oct 7, 2020 by linzhangTuesday
1
running issue for FindSpatiallyVariableFeatures
#3576 opened Oct 6, 2020 by icanwinwyz
Error in irlba(A = t(x = object), nv = npcs, ...) : starting vector near the null space + multiprocess
#3572 opened Oct 6, 2020 by bassanio
1
UMAP object with RunUMAP(return.model=T)?
#3570 opened Oct 6, 2020 by mdidish
1
TransferData returns different predictions with do.cpp set to FALSE vs. TRUE bug
#3565 opened Oct 3, 2020 by bnprks
Mapping top 10 clonotypes
#3564 opened Oct 3, 2020 by betsleve
2
No Negative clusters HTO hashing
#3557 opened Sep 30, 2020 by clairebio27
1
FindTransfer anchors fails to integrate two prior CCA-integrated Seurat objects - please help
#3551 opened Sep 26, 2020 by semmrich
4
Rationale for CLR transformation in ADT counts Analysis Question
#3550 opened Sep 26, 2020 by benslack19
1
Add rastering option to DimPlot() and FeaturePlot() enhancement
#3542 opened Sep 24, 2020 by frederikziebell
@jaisonj708
1
Dataset Integration & Merging The Count Matrix Gene Names
#3540 opened Sep 23, 2020 by dlmatera
3
Spatial experiments: "Neighbour" cells and spot coordinates
#3513 opened Sep 15, 2020 by sdwien
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