@mojaveazure mojaveazure released this Jul 2, 2018 · 4 commits to master since this release

Assets 2

Changes:

  • New HTOHeatmap function
  • Removed unused compiler flags
  • Support for custom PNG arguments for vector-friendly plotting
  • Fix for 'NA'-labeled cells disappearing with custom color scales
  • Moved several lightly-used packages from 'imports' to 'suggests'

@mojaveazure mojaveazure released this Jun 12, 2018 · 48 commits to master since this release

Assets 2
  • New functions for reading in and manipulating data
  • Better support for and validation of assay data
  • Compatability updates for ggplot2 v2.3.0

@mojaveazure mojaveazure released this May 5, 2018 · 170 commits to master since this release

Assets 2

Changes:

  • Support for UMAP dimensional reduction technique
  • New conversion functions
  • Dependency update: requires R 3.4.0 or higher and Matrix 1.2-14 or higher
  • Bug fixes, including memory enhancements to FetchData and AddModuleScore, as well as improvments to visualization functions

@mojaveazure mojaveazure released this Apr 4, 2018 · 509 commits to master since this release

Assets 2

Changes:

  • Support for HTO demultiplexing
  • Utility functions: TransferIdent, CombineIdent, SplitObject, vector.friendly
  • C++ implementation for parts of BuildSNN
  • Preliminary parallelization support (regression and JackStraw)
  • Support for FItSNE
  • MetaDE replaced with metap for combining p-values (MetaDE was removed from CRAN)
  • NMF heatmaps replaced (NMF to be archived by CRAN)

@mojaveazure mojaveazure released this Feb 14, 2018 · 642 commits to master since this release

Assets 2

Changes:

  • Support for multiple-dataset alignment with RunMultiCCA and AlignSubspace
  • New methods for evaluating alignment performance
  • MetaDE replaced with metap for combining p-values (MetaDE was removed from CRAN)
  • NMF heatmaps replaced (NMF to be archived by CRAN)

@andrewwbutler andrewwbutler released this Oct 12, 2017 · 777 commits to master since this release

Assets 2

Version 2.1
Changes:

  • Support for using MAST and DESeq2 packages for differential expression testing in FindMarkers
  • Support for multi-modal single-cell data via @assay slot

@mojaveazure mojaveazure released this Aug 28, 2017 · 1421 commits to master since this release

Assets 2

Version 2.0.1 -- CRAN Release

Seurat is now available on CRAN. This version on Seurat is compatible with 2.0.0, but includes updated documentation, example data sets, and minor bug fixes. Installation can now be done with install.packages(). Binaries are no longer provided as they are built by CRAN. See the CRAN package page for Seurat here.

@andrewwbutler andrewwbutler released this Jul 27, 2017 · 1569 commits to master since this release

Assets 4

Version 2.0
Changes:

  • Preprint released for integrated analysis of scRNA-seq across conditions, technologies and species
  • Significant restructuring of code to support clarity and dataset exploration
  • Methods for scoring gene expression and cell-cycle phase
Pre-release

@satijalab satijalab released this Jul 18, 2017 · 1942 commits to master since this release

Assets 4

Pre-release version of Seurat v2.0.

Additional documentation and vignettes for all new features in Seurat v2.0 will accompany a full release in the near future

Changes:

  • Preprint released for integrated analysis of scRNA-seq across conditions, technologies and species
  • Significant restructuring of code to support clarity and dataset exploration