diff --git a/test/Makefile b/test/Makefile index 01ab358..acfcb06 100644 --- a/test/Makefile +++ b/test/Makefile @@ -11,7 +11,7 @@ JELLYFISH=$(CURR_DIR)/../src/libs/Jellyfish/bin/jellyfish HASH_SIZE=1G ifdef SAMPLEDATA -HASH_SIZE=512M +HASH_SIZE=256M endif ifdef NOIMAGE @@ -86,7 +86,7 @@ $(INFA): ifdef SAMPLEDATA $(DATAFOLDER)/%.fasta.$(KMER_SIZE).jf: $(DATAFOLDER)/%.fasta - head -100000 $? > $?.head.fa + head -10000 $? > $?.head.fa test -f $@ || ( cd $(DATAFOLDER) && ulimit -Sn 4096 && ${JELLYFISH} count -m $(KMER_SIZE) -s $(HASH_SIZE) -t 5 -F 300 --disk --counter-len=$(COUNTER_LEN) --out-counter-len=$(OUT_COUNTER_LEN) --canonical -o $@.tmp --timing=$@.timming $?.head.fa && mv $@.tmp $@ ) else $(DATAFOLDER)/%.fasta.$(KMER_SIZE).jf: $(DATAFOLDER)/%.fasta